PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC01G02270.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family RAV
Protein Properties Length: 339aa    MW: 36388.4 Da    PI: 10.4505
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC01G02270.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP242.22e-1360108155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s+ykGV   + +grW A+I++      r +r++lg+f  +e Aa+a++ a+++++g
  OPUNC01G02270.1  60 SRYKGVVPQP-NGRWGAQIYE------RhARVWLGTFPDEEAAARAYDVAALRYRG 108
                      78****9888.8*********......44*************************98 PP
2B359.65.5e-19175263186
                      EEEE-..-HHHHTT-EE--HHH.HTT..........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                      f+k+ tpsdv+k++rlv+pk++ae+h            +++++        +  s + +   r++s++yvltkGW++Fv+++gL++gD++vF++
  OPUNC01G02270.1 175 FEKAVTPSDVGKLNRLVVPKQHAEKHfplsgaptppPPPPPRP------PARACSSTSRT-ARGSSQSYVLTKGWSRFVREKGLRAGDTIVFSR 261
                      89*************************9987665432222222......12223333333.3889999************************96 PP

                      -S CS
               B3  85 dg 86 
                      + 
  OPUNC01G02270.1 262 SA 263
                      64 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.4E-860108IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-1760116IPR016177DNA-binding domain
CDDcd000182.52E-1460116No hitNo description
PROSITE profilePS5103222.04961116IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.1E-2161116IPR001471AP2/ERF domain
SMARTSM003809.2E-2461122IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.4E-25170285IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.31E-20172274IPR015300DNA-binding pseudobarrel domain
CDDcd100171.04E-16173262No hitNo description
SMARTSM010191.1E-12175277IPR003340B3 DNA binding domain
PfamPF023621.3E-15175263IPR003340B3 DNA binding domain
PROSITE profilePS508639.305175277IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MGVEAVSFSS TSSGASTATT ESGGAVQMSP EPVVAVAAHL PVVEVDEVVT SKPAAVQQSS  60
RYKGVVPQPN GRWGAQIYER HARVWLGTFP DEEAAARAYD VAALRYRGRD AATNFPGAAA  120
SAAELAFLAA HSKAEIVDML RKHTYADELR QGLRRGRGMG ARAQPTPSWA REPLFEKAVT  180
PSDVGKLNRL VVPKQHAEKH FPLSGAPTPP PPPPPRPPAR ACSSTSRTAR GSSQSYVLTK  240
GWSRFVREKG LRAGDTIVFS RSAYGPDKLL FIDCKKNNTA AAAEKPTSEA RVVRLFGVDI  300
AGGDCRKRER AVEMGQEAFL VKRQCVVHQR TPALGALLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A6e-2917227511115DNA-binding protein RAV1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0650080.0AK065008.1 Oryza sativa Japonica Group cDNA clone:J013001E21, full insert sequence.
GenBankAP0029130.0AP002913.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0480E02.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCT8288860.0CT828886.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA058B11, full insert sequence.
GenBankCU4064510.0CU406451.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C110I16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622259.11e-157AP2/ERF and B3 domain-containing protein Os01g0141000
SwissprotQ9AWS01e-158Y1410_ORYSJ; AP2/ERF and B3 domain-containing protein Os01g0141000
TrEMBLA0A0E0JDV40.0A0A0E0JDV4_ORYPU; Uncharacterized protein
STRINGOPUNC01G02270.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25560.16e-63RAV family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]