PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC01G02240.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family RAV
Protein Properties Length: 300aa    MW: 33406.5 Da    PI: 9.5014
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC01G02240.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.24.1e-134694155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                     s+ykGV   + +grW A+I++      r  r++lg+f  +e Aa+a++ a+++++g
  OPUNC01G02240.1 46 SRYKGVVPQP-NGRWGAQIYE------RhSRVWLGTFPDEEAAARAYDVAALRFRG 94
                     78****9888.8*********......44*************************98 PP
2B391.18.5e-29159250184
                      EEEE-..-HHHHTT-EE--HHH.HTT...........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                      f+k+ tpsdv+k++rlv+pk+ ae+h           g    +++ l +ed +g++W+++++y+++s++yvltkGW++Fv+++gL+ gD+v F+
  OPUNC01G02240.1 159 FEKAVTPSDVGKLNRLVVPKQQAEKHfpfplrrstdaG---GKGVLLNFEDGDGKVWRFRYSYWNSSQSYVLTKGWSRFVREKGLRPGDTVAFS 249
                      89****************************99986533...36899***********************************************9 PP

                      E CS
               B3  84 l 84 
                       
  OPUNC01G02240.1 250 Q 250
                      3 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.62E-1346100No hitNo description
SuperFamilySSF541717.85E-1646100IPR016177DNA-binding domain
PfamPF008474.1E-84694IPR001471AP2/ERF domain
PROSITE profilePS5103220.82447102IPR001471AP2/ERF domain
SMARTSM003808.4E-2347108IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.3E-1947100IPR001471AP2/ERF domain
PRINTSPR003678.7E-54859IPR001471AP2/ERF domain
PRINTSPR003678.7E-56884IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.8E-37155271IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.7E-29156267IPR015300DNA-binding pseudobarrel domain
CDDcd100171.26E-27157248No hitNo description
PROSITE profilePS5086313.267159267IPR003340B3 DNA binding domain
PfamPF023621.3E-25159250IPR003340B3 DNA binding domain
SMARTSM010197.9E-20159268IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MEQEGMVFSC NSGGSSSTID SKQEEELAAM EEDEFHQAAE LRRPSSRYKG VVPQPNGRWG  60
AQIYERHSRV WLGTFPDEEA AARAYDVAAL RFRGREAVTN RAAAADGASA GELAFLAAHS  120
KAEVVDMLRK HTYDDELQQG LRRGSRAQPT PRWARQPLFE KAVTPSDVGK LNRLVVPKQQ  180
AEKHFPFPLR RSTDAGGKGV LLNFEDGDGK VWRFRYSYWN SSQSYVLTKG WSRFVREKGL  240
RPGDTVAFSQ SAAAWGTEKH LLIDCKKMER NKATDAIAAI AADDARVVKL FGVDIAGDKR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-4715626611115DNA-binding protein RAV1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2116060.0AC211606.1 Oryza glaberrima clone OG_BBa0048H17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006645486.11e-177PREDICTED: putative AP2/ERF and B3 domain-containing protein Os01g0140700
SwissprotQ9AWS71e-168Y1407_ORYSJ; Putative AP2/ERF and B3 domain-containing protein Os01g0140700
TrEMBLA0A0E0JDV10.0A0A0E0JDV1_ORYPU; Uncharacterized protein
STRINGOPUNC01G02240.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.23e-91related to ABI3/VP1 2