PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC01G00170.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NF-YC
Protein Properties Length: 700aa    MW: 77878.4 Da    PI: 5.2652
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC01G00170.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC89.63.1e-2821122199
            NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdf 91 
                      q+  fw +q   ie+++df +h++P+ar+kki+ +++   m++ + P++lsk celf+ el++r+w  a+  +r  +  +dia+a+++t+++df
  OPUNC01G00170.1  21 QMDEFWRDQqkeIETTKDFSEHAIPMARLKKIISSQKGNMMMTFDMPAFLSKMCELFVQELAMRAWAYAQTHNRCIILDTDIAEAIASTETYDF 114
                      6889**9888889********************************************************************************* PP

            NF-YC  92 lvdivprd 99 
                      lvdi  ++
  OPUNC01G00170.1 115 LVDILHNH 122
                      ***98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.27E-1728125IPR009072Histone-fold
PfamPF008081.6E-944106IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.103.2E-1945119IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 700 aa     Download sequence    Send to blast
MEQTLDVHRS LRLPVPMAQQ QMDEFWRDQQ KEIETTKDFS EHAIPMARLK KIISSQKGNM  60
MMTFDMPAFL SKMCELFVQE LAMRAWAYAQ THNRCIILDT DIAEAIASTE TYDFLVDILH  120
NHHVKHKSTP CSTLTTKRCR LVKQPSTSHL PYQHQLPQFA PTYTPVIPIT SSLTPPISHY  180
IPFSFPSLPQ EVSPLMASTP IVNRSMLLIH NIGRGLGLEG NNINAFTNNN ILDNIVGCSS  240
PVVLASMMSH ALLEVAGAPL NPPNSHSIYM MNMINSSDPS IGNVNVANQA SLAPLGHFNP  300
AILEESSCPS FLHSNNNDTI VAIPEDVDIS GTMHVASDVA AIVFNGEEEE HERETNVEHY  360
QQSEIYESID IRIINGSVAD GNKCSVSSDE LGMIDDSLLH DFLEEFQIWT AVAALEDQQR  420
RRLHRIWERG VAWKPPATLP LPPLVFRLDH AGEVDADGNC LFTAARRAAA AKPDARDLRH  480
RIVRRFSHVY ATAQAPDRDA IDAAVRHLYA PDLKAGWGVH VVQELKLLAP KAHRHHLDAA  540
INDLLDLGIQ REMAAETIYR ERCIAVNNGD SWAKYMSVSG SAEDEHNIIT LQYTEEGLLT  600
IDENRDGHAA AFGDDIAIEC LATEFKREVY VVQAHGADAM VDEDNCVFFL PHRPRGEICE  660
PPIFLFMKGT AWCGAGADHY EPLIASVLQN VTPDKAAVVL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B5e-1929119393NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2297910.0AC229791.1 Oryza minuta clone OM__Ba0036B16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015621624.10.0uncharacterized protein LOC4324193 isoform X3
TrEMBLA0A0E0JD120.0A0A0E0JD12_ORYPU; Uncharacterized protein
STRINGOPUNC01G00170.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91742145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63470.23e-25nuclear factor Y, subunit C4