PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA12G18400.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 365aa    MW: 38395 Da    PI: 6.5145
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA12G18400.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.21.7e-09185233355
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  ONIVA12G18400.1 185 NSHSLAERLRREKISERMKLLQDLVPGC----SKVTGKALMLDEIINYVQSLQ 233
                      58*************************9....556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.67E-17179250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.85E-11180237No hitNo description
PROSITE profilePS5088815.51182232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-16184250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.5E-7185233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-10188238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MDANGGNGFG VESNASAVHG GMAMAWQWHG GQMSGGSSCA AAPPPVQQPA MDSLAWSSTV  60
SPSTGAATAA SGAGFLLPPA AVRGGFGSFP VNSGGIVEPA GDCSSESKKR RSDEIAGTDH  120
ANASNALADS GNETECSKDV NGEVIGPPAT AAAGGKSKGK GAKDAGEAQK EGYSHVRARK  180
GQATNSHSLA ERLRREKISE RMKLLQDLVP GCSKVTGKAL MLDEIINYVQ SLQRQVEFLS  240
MKLSAVNPRI DLDIESLVNN SKDVLRFPGQ PSSAPMGFSF STEMMPGLQL SRPGILQGGV  300
HGMINPDVFT SLMQKQQQND KGAFREPQMH QTLDGSFRNT AQMPYPQVMS SEELSIRQDQ  360
DGFHM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0045570.0AP004557.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0028A08.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankCP0126160.0CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650276.10.0transcription factor bHLH79
TrEMBLA0A0E0JCQ00.0A0A0E0JCQ0_ORYNI; Uncharacterized protein
STRINGONIVA12G18400.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29093785
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26260.33e-47cryptochrome-interacting basic-helix-loop-helix 5