PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA12G17350.5
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 466aa    MW: 49088.7 Da    PI: 6.5993
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA12G17350.5genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH53.93.2e-17278324455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+ksLq
  ONIVA12G17350.5 278 VHNLSERRRRDRINEKMKALQELIPHC-----NKTDKASMLDEAIEYLKSLQ 324
                      6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.35E-19271328No hitNo description
SuperFamilySSF474591.16E-20272333IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.559274323IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-14278324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-20278330IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.1E-19280329IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006783Biological Processheme biosynthetic process
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009959Biological Processnegative gravitropism
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010161Biological Processred light signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0010313Molecular Functionphytochrome binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MNQFVPDWNT TGMGDGFAPL GEDDGLVELL WCNGHVVMQS QAPRKPPRPE RTTAAAAAMA  60
EDESASWFQY PVDDVLEKDL FTELFGEMTA AGGGGGDVRR AACKEERGAV AAFQSRMMPP  120
PWPARGKAEF GDVDDVCGVS EVVMAAKMDG EAKVAAAEAV GESSMLTIGS SICGSNHVQT  180
PPAGAAPPPV GNGKAAAARR AHDTATVASS SMRSRSCTAK AEPRDVAAAA GGGKRKQRGA  240
AAMESGSPSE DVEFESAAAT CSPAQKTTTA KRRRAAEVHN LSERRRRDRI NEKMKALQEL  300
IPHCNKTDKA SMLDEAIEYL KSLQLQLQMM WIGGGMAPPA VMFPAAGVHQ YMQRMGAVGM  360
GPPHMASLPR MPPFMAPPPA AVQSSPVVSM ADPYARCLAV DHLQPPSPML AAAKNLQQQQ  420
NTAEPPPPPP AGSLPPAATA QPLTPDDILH KKYDNCSKSE SKGGTS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1271286RRRAAEVHNLSERRRR
2282287ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00074ChIP-chipTransfer from AT2G20180Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0667630.0AK066763.1 Oryza sativa Japonica Group cDNA clone:J013074J19, full insert sequence.
GenBankCT8297130.0CT829713.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA240D01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015618074.10.0transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like isoform X1
RefseqXP_015618075.10.0transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like isoform X1
RefseqXP_015618076.10.0transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like isoform X1
RefseqXP_015618077.10.0transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like isoform X1
RefseqXP_015618078.10.0transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like isoform X2
RefseqXP_015618079.10.0transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like isoform X2
TrEMBLA0A0E0JC940.0A0A0E0JC94_ORYNI; Uncharacterized protein
STRINGONIVA12G17350.50.0(Oryza nivara)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.21e-35phytochrome interacting factor 3