PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA12G16860.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 297aa    MW: 31879.2 Da    PI: 5.4719
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA12G16860.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_152.41.2e-16115170459
                      XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevakl 59 
                       kr+rr+ +NRe+ArrsR+RK+a +  Le  v +L +eN +L+k+l+ +++++++ 
  ONIVA12G16860.1 115 AKRTRRMLSNRESARRSRKRKQAHLNDLESQVSQLRSENASLQKRLSDMTQKYKQS 170
                      69*****************************************7777777776654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.2E-18108176IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.047114177IPR004827Basic-leucine zipper domain
PfamPF001707.1E-14115169IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.25E-12116168No hitNo description
Gene3DG3DSA:1.20.5.1708.3E-14116169No hitNo description
CDDcd147021.24E-18117167No hitNo description
PROSITE patternPS000360119134IPR004827Basic-leucine zipper domain
PfamPF124982.8E-13183231IPR020983Basic leucine-zipper, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MKRGGAGVGG GGGGGDPGAY AAVLKTKLDL YCAAVAKSME AKLQESSLGY LNLQASDTSQ  60
LVSQDSFNGY GSTRVTNSNA IHEDDDQGKP ANSGTSKEQS DDDGDLEEDT DPVNAKRTRR  120
MLSNRESARR SRKRKQAHLN DLESQVSQLR SENASLQKRL SDMTQKYKQS TTEYGNLQDD  180
MNAMRRKVNI AEEAVRRVTG IGLQLFTTSE MPASSMPFSS GVSDAASAAL VEDDWTNCSL  240
PDEAIPVPSA AMALRSPSVR RVASLENLQK RIHAGDVTHF EAASALSLPE ATACDNK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1128134RRSRKRK
2128135RRSRKRKQ
3130135SRKRKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU4056940.0CU405694.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C113M07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620821.10.0light-inducible protein CPRF2 isoform X2
TrEMBLA0A0E0JC350.0A0A0E0JC35_ORYNI; Uncharacterized protein
TrEMBLA0A0E0RJN80.0A0A0E0RJN8_ORYRU; Uncharacterized protein
STRINGORUFI12G20050.10.0(Oryza rufipogon)
STRINGONIVA12G16860.20.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75952943
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28770.23e-24bZIP family protein