PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA12G16650.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 216aa    MW: 23551.5 Da    PI: 4.4374
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA12G16650.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.93.2e-12971381055
                      HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      ++RR +iN+ + +L++l+P +    +k ++ a++L k+++Y+ksLq
  ONIVA12G16650.1  97 QKRRCKINENLKTLQQLVPGC----DKSNNQASTLDKTIRYMKSLQ 138
                      79******************9....788*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.05587137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.2E-794143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.24E-1197142No hitNo description
SuperFamilySSF474593.53E-1397148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.7E-1097138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-1397145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MEMTSYNDVD AGDMFAAADY YSAGDGGDLF DMVWPGRRRR RQEDNTSGCL PLSPPPPPPE  60
LAVDDQLLAG GDGGGSEPVA VAVAEDDDSG ERWTENQKRR CKINENLKTL QQLVPGCDKS  120
NNQASTLDKT IRYMKSLQQH VQAMSVGCIM KPAAAGVSYQ PFPQPPPPEA VTCWSSWRRS  180
PQDPGMPLLD LPPPPLPLST TTTMTCSLTS SFCWCR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL7317431e-90AL731743.2 Oryza sativa chromosome 12, . BAC OSJNBa0001B02 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149681e-90AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBankCP0126201e-90CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0JC111e-158A0A0E0JC11_ORYNI; Uncharacterized protein
STRINGONIVA12G16650.11e-158(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP164341012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.13e-13phytochrome interacting factor 3-like 5