PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA12G16610.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 288aa    MW: 30327.8 Da    PI: 10.2433
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA12G16610.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.17.7e-14119165455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      ahn  E+rRR +i ++f +L++l+P +      K + a++L ++++Y+ksLq
  ONIVA12G16610.1 119 AHNLTEKRRRFKITERFRTLQRLVPGC-----DKSNQASTLDQTIQYMKSLQ 165
                      8*************************9.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.986115164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.7E-17119172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-11119165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-16119177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-13121170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.26E-11121169No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MGTTTTTLLP EQPLVDDHHL PAAAAAAPPS EEEMAAWLYP IVSGHEVAGG GWRSPEAQDD  60
RRAAPAPEKK QMEKMPAAAS PTTTMNKDET SDDSGERKKK KASSAAGKAS KHHHAAAGAH  120
NLTEKRRRFK ITERFRTLQR LVPGCDKSNQ ASTLDQTIQY MKSLQHQLKA MSVVGSPPAL  180
LYPAAVHPQS YMHPPPPPPP VTMPMHPGMV LAAPPPGAAP PPGPPAMVPF GAMLPYPPYP  240
AVLLPPPAAA TLYGRPPAPA PGVAARRHGS SGGGRISKSS SSSLCKKL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1123128EKRRRF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL7325350.0AL732535.4 Oryza sativa chromosome 12, . BAC OSJNBa0035N13 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBankCP0126200.0CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619315.17e-90transcription factor APG
RefseqXP_025877604.15e-91splicing factor 3B subunit 4
TrEMBLA0A0E0JC050.0A0A0E0JC05_ORYNI; Uncharacterized protein
STRINGONIVA12G16610.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62832452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.22e-15phytochrome interacting factor 3