PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA12G16580.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 268aa    MW: 27928.1 Da    PI: 10.7887
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA12G16580.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.92.1e-1488135455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      ahn  E+rRR +i ++f +L++l+P +    + K + a++L ++++Y+ksLq
  ONIVA12G16580.1  88 AHNLTEKRRRFKITERFRTLQRLVPGC----DNKSNQASTLDQTIQYMKSLQ 135
                      8*************************9....89******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.79E-1783143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.03784134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.78E-1488139No hitNo description
PfamPF000104.1E-1288135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-1788141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.8E-1390140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MAAWLYPIVG GHQVAAGGWL SPEAGDDRRA APPAPEKKQM DNMPAVASPT TTMNKDEASD  60
DSGERKKKKK KASSAAGKAS RHRHAAGAHN LTEKRRRFKI TERFRTLQRL VPGCDNKSNQ  120
ASTLDQTIQY MKSLQHQLEA TSAVGSPAAA VLYPAAVHPQ SYMHPPAPPP PVAGAAAPVT  180
MAPMPAGMVL AAAPPGAAPP PGPPATMMPF GAMLPYPPYP AVLLPPPPAT LYGRPPAAAP  240
SVAARRHGST SGGGRISKSS SSSLRKEL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16369ERKKKKK
26470RKKKKKK
39297EKRRRF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126200.0CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619315.11e-117transcription factor APG
TrEMBLA0A0E0JC020.0A0A0E0JC02_ORYNI; Uncharacterized protein
STRINGONIVA12G16580.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62832452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.21e-12phytochrome interacting factor 3