PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA12G16570.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 243aa    MW: 26240.7 Da    PI: 7.8546
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA12G16570.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.91.8e-08156182430
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC CS
              HLH   4 ahnerErrRRdriNsafeeLrellPka 30 
                      +h   E+rRR+riN++f  L++l+P +
  ONIVA12G16570.1 156 THGLTEKRRRSRINEKFKMLQRLVPGC 182
                      78999********************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.22E-8150184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.194152201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.68E-6155184No hitNo description
Gene3DG3DSA:4.10.280.101.9E-9155185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.0E-6156182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MMSFPYSSGD LGEATTAAAA AVDMITLDQI FRDYDASTGD DLFELVWESC GGGEIDSGAG  60
EVQPAGVPCC RRLLPGSSPE PTSEDEMAAW LSTIVTGSGG GGGDDVAAGG DHQDPAVKKP  120
DGEPLTEKMD KKLPTRTEER QRVKHKARRN PGYAETHGLT EKRRRSRINE KFKMLQRLVP  180
GCDKAMYPTM VRPAAVYPVV QPPPAFAAGG PPAASQGGLH RHRRLMVVVS VHHRCRCFRL  240
GRQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1080420.0AK108042.1 Oryza sativa Japonica Group cDNA clone:002-137-D10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619633.11e-143transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like
TrEMBLA0A0E0JC011e-179A0A0E0JC01_ORYNI; Uncharacterized protein
STRINGONIVA12G16570.11e-180(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP165781111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.11e-07bHLH family protein