PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA12G16560.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 504aa    MW: 53197.8 Da    PI: 10.2112
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA12G16560.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.73.6e-31438495359
                      -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp ++++tYegeHnh+
  ONIVA12G16560.1 438 DEYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCVDDPAMLIVTYEGEHNHT 495
                      9*************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105332.1E-18389434IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.2E-33424495IPR003657WRKY domain
PROSITE profilePS5081130.148431494IPR003657WRKY domain
SuperFamilySSF1182908.76E-27434495IPR003657WRKY domain
SMARTSM007744.4E-38436496IPR003657WRKY domain
PfamPF031068.1E-27438494IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    Send to blast
MAARTRHTQF RPYSRGRAVK AHLHIEDSIS LTLVLDTVDP HGERFPSRPS SQSNAPGSST  60
SPYFPTRVAS SPTPLSSSSS SPLLPASSTP LPTPIPSSPR SRWPDPSGDD DEPLAGTAPC  120
SELRESEASL AGLAPAAAAA AAMEEEVEAA NRAAVESCHR VLALLSQQQD PALLRSIASE  180
TGEACAKFRK VVSLLGNGGG GGGGGGGGHA RGRMAGRSRP SAVLREKGFL ESSSGGGQLG  240
MMMSGAATPS TSSAVHLRNR IGGGSGVPPD SLRGLDLVSS SSKGGAHQFD PPKLVQPLSV  300
QFQFGATAHR YPFQQHQHQQ KLQAEMFKRS NSGISLKFDS PSATGTMSSA FMSSLSMDGS  360
VASLEGKPPF HLISGPVASD PVNAHHAPKR RCTGRGEDGS GKCATTGRCH CSKRRKLRIK  420
RSIKVPAISN KIADIPPDEY SWRKYGQKPI KGSPHPRGYY KCSSVRGCPA RKHVERCVDD  480
PAMLIVTYEG EHNHTRLPTQ SAQT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A5e-20424494271WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0706480.0AK070648.1 Oryza sativa Japonica Group cDNA clone:J023062B16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620342.10.0protein WRKY1
SwissprotQ32SG46e-90WRKY1_MAIZE; Protein WRKY1
TrEMBLA0A0E0JC000.0A0A0E0JC00_ORYNI; Uncharacterized protein
STRINGONIVA12G16560.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28593887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.14e-71WRKY DNA-binding protein 21