PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA12G13670.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 539aa    MW: 57704.1 Da    PI: 7.4023
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA12G13670.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.41.1e-31269325259
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      dDgynWrKYGqK+vkgs++prsYY+Ct+++Cpvkkkve+++ d+++ ei+Y+g+Hnh+
  ONIVA12G13670.1 269 DDGYNWRKYGQKVVKGSDCPRSYYKCTHPNCPVKKKVEHAE-DGQISEIIYKGKHNHQ 325
                      8**************************************99.***************8 PP
2WRKY1079.7e-34425483159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYGqK+vkg+++prsYY+Ct+agC+v+k++er+++dpk+v++tYeg+Hnhe
  ONIVA12G13670.1 425 LDDGYRWRKYGQKVVKGNPHPRSYYKCTYAGCNVRKHIERASSDPKAVITTYEGKHNHE 483
                      59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.7E-28265327IPR003657WRKY domain
SuperFamilySSF1182902.88E-25267327IPR003657WRKY domain
SMARTSM007742.5E-34268326IPR003657WRKY domain
PROSITE profilePS5081123.192269327IPR003657WRKY domain
PfamPF031061.6E-24269325IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.2E-36411485IPR003657WRKY domain
SuperFamilySSF1182902.62E-29417485IPR003657WRKY domain
PROSITE profilePS5081137.413420485IPR003657WRKY domain
SMARTSM007741.1E-39425484IPR003657WRKY domain
PfamPF031064.2E-26426483IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 539 aa     Download sequence    Send to blast
MSARPPPPPR PRLALPPRSA AESLFTGAGD ASPGPLTLAS ALFPSDPDGG GGGGVMTSSS  60
SSAAGATSFT QLLIGNLSAP PPPPPPQQQQ QQREAARGGG VARAGPALSV APPPAAGSVF  120
TVPPGLSPSG LLDSPGLLFS PAMFDAFDVL DMFIPDKILP KRATRIKLDI YFVKTSPEGG  180
FGMSHREALA QVTAQASHSP LRMFDHTEQP SFSAAPTSSE AMQHMNAAVN MTGISDMVMG  240
PTNNENVAFQ PAEASQRYQV NAPVDKPADD GYNWRKYGQK VVKGSDCPRS YYKCTHPNCP  300
VKKKVEHAED GQISEIIYKG KHNHQRPPNK RAKDGSSSAA DQNEQSNDTV SGLSGIKRDQ  360
EAIYGMSEQL SGLSEGDDMD DGESRPHEAD DKESDSKKRN IQISSQRTSA EAKIIVQTTS  420
EVDLLDDGYR WRKYGQKVVK GNPHPRSYYK CTYAGCNVRK HIERASSDPK AVITTYEGKH  480
NHEPPVGRGN NQNAGNAAPS SSAQQNMQNL SSNQASLTMA DFNNINQRPI GVLQFKSEE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-38259485877Probable WRKY transcription factor 4
2lex_A2e-38259485877Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00260DAPTransfer from AT2G03340Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL7317590.0AL731759.2 Oryza sativa chromosome 12, . BAC OSJNBa0009K11 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620542.10.0probable WRKY transcription factor 3
TrEMBLA0A0E0JAV80.0A0A0E0JAV8_ORYNI; Uncharacterized protein
STRINGONIVA12G13670.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134538122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.11e-105WRKY DNA-binding protein 3