PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA12G13030.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 301aa    MW: 31999.1 Da    PI: 9.2881
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA12G13030.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.71.7e-07165209755
                      HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      ++ r RR+ri s+ +eL +l+P a    ++ +s ae+L+ A ++++ Lq
  ONIVA12G13030.1 165 AAARERRRRISSKTAELSRLIPGA----ARMNSTAEMLQAAARHVRLLQ 209
                      567899999**************8....577***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.982158208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.2E-8160217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-7161217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.1E-6164214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.3E-5165209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MSTATTRLGV RRPTPAPVFD FDRLLLGSSS GGGMVGDDVV ADALLGFTYD PPAHGAAALD  60
DVLAPLPGAD KRPRERGVVA DGRSFRRAGA ALPAPPTELV TRFVPTPPPL PPVQQQQQQR  120
WELPDAVFVQ GAGVAEAKKG GAAASHDDHD DGRHHHHHNQ AVQSAAARER RRRISSKTAE  180
LSRLIPGAAR MNSTAEMLQA AARHVRLLQA QVGMLALIHS SGEAKAASSM AASREHHQMM  240
MMRALLASGG VQERLAGEGR CLVPTSLVRA IADDDAMATS NPALSRDVNS FKDSLDQQQQ  300
Q
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126200.0CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006664569.13e-45PREDICTED: transcription factor bHLH52-like
TrEMBLA0A0E0JAM30.0A0A0E0JAM3_ORYNI; Uncharacterized protein
STRINGONIVA12G13030.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62013051
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30670.12e-20bHLH family protein