PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA12G12810.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 113aa    MW: 12626.3 Da    PI: 10.7148
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA12G12810.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF32.98.6e-11935127
                     S---SHHHHHHHHHHHHHHHHHHHHHH CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeEL 27
                     krien++n qvtfskRr  il KA E+
  ONIVA12G12810.1  9 KRIENSTNHQVTFSKRRSRILMKAREI 35
                     79************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.3E-6159IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.62E-12137IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.731137IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-12323IPR002100Transcription factor, MADS-box
PfamPF003191.3E-71037IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-122338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 113 aa     Download sequence    Send to blast
MGRGKIEIKR IENSTNHQVT FSKRRSRILM KAREIYICKK PITWNCNTNS NKAQQQSCIR  60
DEQIEVQDLI SSSAKLKSGS SSGDSGATTV DRRLAAVAHW ESNPAVRIHQ ASA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126203e-68CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0JAJ92e-77A0A0E0JAJ9_ORYNI; Uncharacterized protein
STRINGONIVA12G12810.13e-78(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP4038533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13790.11e-12AGAMOUS-like 15