PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA12G09980.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 416aa    MW: 44391.3 Da    PI: 6.3127
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA12G09980.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM64.43.5e-20111352128
              NAM   2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykv.ePwdLp.k...kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                        GfrF+P+ e++v++yL   v+g++  ++e +i+++d+y + eP+dL  k    +++++ + +fF+  ++ +    +  r++  g+W ++ + 
  ONIVA12G09980.1  11 ELGFRFNPSPEQVVTYYLPCLVAGQQpKDTEGCIHSADVYGAdEPRDLAgKyapVARSSNGNRFFFTGCKRMK---GKFCRSAGGGTWVSQSS- 100
                      57**********************994445556*******9869****8435543334445789999999876...4799999******8866. PP

              NAM  90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      k++++++g ++g  k + f     ++g++tdW+m+ey+l
  ONIVA12G09980.1 101 KDLKNREGIKIGEVKNFRFK----KDGKNTDWLMEEYHL 135
                      888888*************7....78899********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.27E-219154IPR003441NAC domain
PROSITE profilePS5100523.23310154IPR003441NAC domain
PfamPF023651.8E-1313135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MEKGKLDFLL ELGFRFNPSP EQVVTYYLPC LVAGQQPKDT EGCIHSADVY GADEPRDLAG  60
KYAPVARSSN GNRFFFTGCK RMKGKFCRSA GGGTWVSQSS KDLKNREGIK IGEVKNFRFK  120
KDGKNTDWLM EEYHLCGQES GDVVEPVVCR IYVSPRAAPD SVAHQESAVL QPQEPAPLPV  180
PAAPAPPRQV PVVTQQAPPP PPPLVPVITQ DAPPLKRPAP VAAPPCAKKM RGDVSAFPVV  240
RQSCVAAPRC APRVVAPPPR HPPIQTYPTD PFESAPLDPF EPPPAAASVT GRHHTPQPSV  300
PVPATPEQGL SLAASNSPEL DPANIGIDMD ELMRYLGNTP LDGVLPSQLF VLPTNDDEDV  360
ELAKVLEDGL QGGGGRQWQS TAVCDSSSAT GILARHGATA ASSTHPDLSQ GSVRAQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126200.0CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619211.20.0uncharacterized protein LOC107275392
TrEMBLA0A0E0J9M10.0A0A0E0J9M1_ORYNI; Uncharacterized protein
STRINGONIVA12G09980.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18322799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10490.19e-12NAC domain containing protein 52