PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA12G06190.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | Nin-like | ||||||||
Protein Properties | Length: 386aa MW: 41324.4 Da PI: 7.1228 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 79.8 | 3e-25 | 300 | 350 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +k+++l+d++ yF+lpi++AAk+L++c+T+LK iCR++G+ RWP+Rk++s+ ONIVA12G06190.1 300 TKQLQLSDIAPYFELPIAKAAKKLDICATALKGICRKHGVLRWPYRKVRSI 350 89**********************************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 17.086 | 290 | 372 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 2.3E-21 | 303 | 350 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 386 aa Download sequence Send to blast |
MAGDGGNGAA DGGGEHLELD FFPSPLLDNF DYGGASTSSS AAPAPAPPQE DYCSGCQVLR 60 EVVHSNGLEI TKLCIHGGVA SGEFYHAILD VYRVSASAPA PALAHHSIIK GRGYDWVKQY 120 LTEYALRRAG GGFAVVQDSL SAFHDALCTT MAPCSSHVGD DDAHRRASSS SAAAAEERTN 180 GNGDHGQLVV HNAAVLPMLE SSRCLVAADQ AATTNNNGSG DRRLLVLDTT AIQPPASGCI 240 LHMAFPSKSY QSSRPTTLPS RYQECTCNPV AYEMDGVRSS LAPICWPELL GYNVTNREKT 300 KQLQLSDIAP YFELPIAKAA KKLDICATAL KGICRKHGVL RWPYRKVRSI DRQIATLRRS 360 GNGDATRNEI ETLIASRRRI VAGLDQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012620 | 0.0 | CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006664445.1 | 1e-113 | PREDICTED: uncharacterized protein LOC102713973 | ||||
TrEMBL | A0A0E0J865 | 0.0 | A0A0E0J865_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA12G06190.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8055 | 29 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53040.1 | 2e-13 | RWP-RK domain-containing protein |