PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA12G05670.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ZF-HD | ||||||||
Protein Properties | Length: 294aa MW: 31107 Da PI: 8.4525 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 98.5 | 5.2e-31 | 70 | 125 | 3 | 59 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 ++rY+eClkNhAa++Gg a+DGCgEfmp geeg+ +al+C+ACgCHRnFHR+e + ONIVA12G05670.1 70 AARYRECLKNHAAAIGGSATDGCGEFMPG-GEEGSLDALRCSACGCHRNFHRKELDA 125 689*************************9.999********************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 7.2E-28 | 71 | 122 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.2E-29 | 72 | 122 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 2.0E-22 | 72 | 124 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.524 | 73 | 122 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 4.21E-19 | 184 | 253 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.2E-29 | 186 | 254 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 1.0E-26 | 192 | 248 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 294 aa Download sequence Send to blast |
MDLSGAQGEL PLPMHAAASP YLGLHHDHHH HHGGGGGGGM NGRHMSPPTP PAAAEESKAV 60 VVVSSSSSAA ARYRECLKNH AAAIGGSATD GCGEFMPGGE EGSLDALRCS ACGCHRNFHR 120 KELDAAATPL HHHHQLLGVG AHPRGHGHHH HHLLVAALPP PTRMVMPLSA MHTSESDDAA 180 ARPGGGGAVA ARKRFRTKFT AEQKARMLGF AEEVGWRLQK LEDAVVQRFC QEVGVKRRVL 240 KVWMHNNKHT LARRHLHPSS SAAAAGDDDD GAPPHPDPGG ASSPPPPPHH LRLQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh5_A | 8e-25 | 192 | 250 | 17 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00258 | DAP | Transfer from AT2G02540 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL954853 | 0.0 | AL954853.5 Oryza sativa chromosome 12, . BAC OSJNBb0071I17 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence. | |||
GenBank | AP014968 | 0.0 | AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015618832.1 | 1e-110 | zinc-finger homeodomain protein 3 | ||||
Swissprot | Q2QW44 | 1e-111 | ZHD3_ORYSJ; Zinc-finger homeodomain protein 3 | ||||
TrEMBL | A0A0E0J7Y0 | 0.0 | A0A0E0J7Y0_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA12G05670.2 | 0.0 | (Oryza nivara) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14440.2 | 5e-56 | homeobox protein 31 |