PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA12G04230.1

Organism

Oryza nivara

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB

Protein Properties

Length: 266aa MW: 28647.9 Da PI: 8.2353

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA12G04230.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.1	1.7e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ ++q+G g+W++ ++ g+ R++k+c++rw +yl ONIVA12G04230.1 14 KGAWTKEEDQRLIAHINQHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	59.9	5.5e-19	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T eEdel+++++++lG++ W++Ia +++ gRt++++k++w+++ ONIVA12G04230.1 67 RGNFTDEEDELIIKLHELLGNK-WSLIAGRLP-GRTDNEIKNYWNTH 111 89******************.*****.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.5E-24	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	16.531	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	1.01E-29	13	108	IPR009057	Homeodomain-like
SMART	SM00717	8.1E-14	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	2.9E-15	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	3.67E-11	16	61	No hit	No description
PROSITE profile	PS51294	29.116	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.2E-28	65	116	IPR009057	Homeodomain-like
SMART	SM00717	4.9E-18	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	5.1E-17	67	111	IPR001005	SANT/Myb domain
CDD	cd00167	2.69E-13	69	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 266 aa Download sequence Send to blast
MGRSPCCEKA HTNKGAWTKE EDQRLIAHIN QHGEGCWRSL PKAAGLLRCG KSCRLRWINY 60 LRPDLKRGNF TDEEDELIIK LHELLGNKWS LIAGRLPGRT DNEIKNYWNT HIKRKLLARG 120 LDPLTHRPLN AAAAVAGHHH LAAGGSSCSP DATSGHSSCS DGDEYRGGID LNLSISPPSS 180 SSQPSSPPPP PHEAEARRAG ATASYTYHHH YSETREKICL CLNHLGLHGG DECSCGGSSA 240 SSSSSPPPAT ASSRAFTFAN ASSSTV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	5e-30	13	116	26	128	MYB TRANSFORMING PROTEIN
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK063027	0.0	AK063027.1 Oryza sativa Japonica Group cDNA clone:001-110-B12, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015618922.1	0.0	myb-related protein 308
Swissprot	P81393	6e-88	MYB08_ANTMA; Myb-related protein 308
TrEMBL	A0A0E0REG7	0.0	A0A0E0REG7_ORYRU; Uncharacterized protein
STRING	ORUFI12G05190.1	0.0	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP116	37	448

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38620.1	3e-86	myb domain protein 4

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]