PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA12G04090.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TCP
Protein Properties Length: 417aa    MW: 42429.2 Da    PI: 6.1836
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA12G04090.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP136.72e-421042493125
              TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.......eaesssssasnsssgk 89 
                       +k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai+++tgt++++a+++       + ++s ssasn++ ++
  ONIVA12G04090.1 104 LAKRPSKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFSslnisirSGAASASSASNPNRAS 197
                      689*****************************************************************88766666665566666666666666 PP

              TCP  90 aaksaa.kskksqksaasalnlakesr...............akarararer 125
                        ++ a +++++q++ +++l ++++                 a a +r+r+r
  ONIVA12G04090.1 198 PFPALAlHPHHQQHDVSAMLGYHHHLLpppqqqqespqdpggAGAFMRKRYR 249
                      6666666888888888888888875445666666666666555555554444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136928.705109163IPR017887Transcription factor TCP subgroup
PfamPF036344.3E-38109220IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001047Molecular Functioncore promoter binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MDHGGGGGGG GAAPSSSNSG GGSGGGGGGG GRENHPHHPF YYSGPAAAAA AAAAAQQQQQ  60
TFMGALAITP VVAEQPQGSS GGGEKKVVAP TTPAAAGAAA TTTLAKRPSK DRHTKVDGRG  120
RRIRMPALCA ARVFQLTREL GHKSDGETIE WLLQQAEPAI IAATGTGTIP ANFSSLNISI  180
RSGAASASSA SNPNRASPFP ALALHPHHQQ HDVSAMLGYH HHLLPPPQQQ QESPQDPGGA  240
GAFMRKRYRE DLFKEDDDRQ DPSAPKAREQ QPTTPQAAAA AAAAAMWAVA PNTAAPGGAF  300
WMLPVSASSA AAARPTEQPM WSFAGGGGGA ATVQAPLQFM STRVNYPGSA GAGMSDTNLG  360
MLAALNAYNR GGAGDQQPQQ QPEMDQQGRN DDDDDDGDDS GDEDNGGANN NNNNSSQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL7139330.0AL713933.6 Oryza sativa chromosome 12, . BAC OJ1041_D02 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015618822.10.0transcription factor PCF3-like
SwissprotQ53PH25e-75PCF3_ORYSJ; Transcription factor PCF3
TrEMBLA0A0E0J7D70.0A0A0E0J7D7_ORYNI; Uncharacterized protein
STRINGONIVA12G04090.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP49342652
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58100.13e-44TCP family protein