PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA12G01890.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 976aa    MW: 108830 Da    PI: 7.1945
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA12G01890.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS39.21e-12201262110
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPilkfs 94 
                      v lL ecA +v++g++e+a+   ++++ l   ++ p+q l + ++  L +rl++s ++ly al +ps+    + s+  aa++ f+++ P+l  +
  ONIVA12G01890.1  20 VPLLHECASHVTEGSFEKADFSFKKIRMLT-IADGPLQHLSKIIVDSLDHRLLSSIQGLYGALiNPSDYF--EKSTLRAARHNFFKLNPYLSTG 110
                      6789**********************9876.5667*************************9995555554..35555567788*********** PP

             GRAS  95 hltaNqaIleavegee 110
                      ++t N+aI+ea+e e+
  ONIVA12G01890.1 111 FVTINRAIMEAMEDEK 126
                      *************986 PP
2GRAS206.71.3e-63168475109371
             GRAS 109 eervHiiDfdis..qGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp.. 198
                       + vHi+D++ s  ++ QW+ Ll+ +  Rp+g+p+l +T++++    +++ l e+++ L+k Ae+l+v+f+f   v  rle+l++++Lr     
  ONIVA12G01890.1 168 LQVVHIVDLSCSaaHPWQWLKLLDDFHGRPGGAPELYLTVLHD----DNDFLAEMQSLLSKKAESLEVSFRFIS-VIGRLETLDFSNLRSTFqi 256
                      4789*****8653389***************************....9**************************.799**********544445 PP

             GRAS 199 ..gEalaVnlvlqlhrll.........................................desvsleserdevLklvkslsPkvvvvveqeadhn 249
                        g a+a++++lq+hrll                                           s  +++   ++L++++ l+P+++v +eq+adhn
  ONIVA12G01890.1 257 kfGVAVAISCALQMHRLLlvddnlsstsiaqlqkmanftqpkqmassvcspastlnylqTPSPRTPKLLARLLSAIRALKPNIMVNMEQDADHN 350
                      55*******************************************************98666777778899*********************** PP

             GRAS 250 sesFlerflealeyysalfdsleaklpres...eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakll 340
                      +  F +rf e l+yy+alfd+++a ++++    +er  vEr++l++ei+n++ ceg +r erhe+l +W + +ee+GF++v+ls +a  + k  
  ONIVA12G01890.1 351 ALLFRDRFNEVLNYYAALFDCFHAVAAANPgrtDERLRVERMILREEIKNILVCEGVHRHERHERLDQWAMHMEESGFHNVQLSFSAIREGKEN 444
                      **********************77654444456************************************************************* PP

             GRAS 341 lrkvksdgyrveeesgslvlgWkdrpLvsvS 371
                      l  ++ +  + +e++g+++l+W + +L+s+S
  ONIVA12G01890.1 445 LLSFGLKNCQNKEDRGCFLLCWGSTNLYSIS 475
                      *****888*********************99 PP
3GRAS356.73.5e-1095289652374
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                      + lL++cA  vs+g++ +a+ +L+++ +las d+  ++qRlaa+f+ ALa++l++  ++l++al +s++s +    +  a++  ++v P+lk++
  ONIVA12G01890.1 528 IGLLYQCAAEVSAGSFDRANLCLEHITQLASLDApHALQRLAAVFADALARKLLNLIPGLSRALLSSANSADA-HLVPVARRHMFDVLPFLKLA 620
                      679*******************************9*****************************888887544.44446778899********* PP

             GRAS  95 hltaNqaIleavegeervHiiDfd..isqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrl 186
                      +lt+N+aIlea+ege+ vH++Df+  + +++QW+aL++a+  R+egpp+lRiT+v++    ske l +++  L+k Ae++++ f+fn+ v+ +l
  ONIVA12G01890.1 621 YLTTNHAILEAMEGERFVHVVDFSgpAANPVQWIALFHAFRGRREGPPHLRITAVHD----SKEFLANMAAVLSKEAEAFDIAFQFNA-VEAKL 709
                      ***********************966899****************************....9**************************.7999* PP

             GRAS 187 edleleeL....rvkpgEalaVnlvlqlhrll.............................................................. 214
                      +++++++L     v++gEalaV++vlqlhrll                                                              
  ONIVA12G01890.1 710 DEMDFDALrhdlGVRSGEALAVSVVLQLHRLLavddgrrhaatgcltpvqiiarssprsfgellerelntrlqlspdasvvsslsshspaaata 803
                      *999998843335667****************************************************************************98 PP

             GRAS 215 desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrer 308
                      +++++++ +  ++L++v+slsPk++v++eqea+hn++ F erf eal+yy++lfd+l+ + ++++ er+ vEr+llg+ei+ vvacegaer+er
  ONIVA12G01890.1 804 AHPTTSTPKLGSFLSAVRSLSPKIMVMTEQEANHNGGAFQERFDEALNYYASLFDCLQRS-AAAAAERARVERVLLGEEIRGVVACEGAERVER 896
                      555555556999*********************************************999.68889**************************** PP

             GRAS 309 hetlekWrerleeaGFkpvplsekaakqaklllrkvksdg.yrveee..sgslvlgWkdrpLvsvSaWr 374
                      he++++W +r+e+aG++ v ls++ a++a+ ll+ +++ g y+v ++  s+ ++++W++rpL++v+aWr
  ONIVA12G01890.1 897 HERARQWAARMEAAGMERVGLSYSGAMEARKLLQSCGWAGpYEVRHDagSHGFFFCWHKRPLYAVTAWR 965
                      *************************************8888****885566789**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098532.9911458IPR005202Transcription factor GRAS
PfamPF035143.5E-1020126IPR005202Transcription factor GRAS
PfamPF035144.6E-61168475IPR005202Transcription factor GRAS
PROSITE profilePS5098550.597501942IPR005202Transcription factor GRAS
PfamPF035141.2E-106528965IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 976 aa     Download sequence    Send to blast
MMHGLWVQDQ GMVDHLAQLV PLLHECASHV TEGSFEKADF SFKKIRMLTI ADGPLQHLSK  60
IIVDSLDHRL LSSIQGLYGA LINPSDYFEK STLRAARHNF FKLNPYLSTG FVTINRAIME  120
AMEDEKNFLE IKVKSNLCSI LKLSHYNFKT LQGAIYVERS LMFNMVELQV VHIVDLSCSA  180
AHPWQWLKLL DDFHGRPGGA PELYLTVLHD DNDFLAEMQS LLSKKAESLE VSFRFISVIG  240
RLETLDFSNL RSTFQIKFGV AVAISCALQM HRLLLVDDNL SSTSIAQLQK MANFTQPKQM  300
ASSVCSPAST LNYLQTPSPR TPKLLARLLS AIRALKPNIM VNMEQDADHN ALLFRDRFNE  360
VLNYYAALFD CFHAVAAANP GRTDERLRVE RMILREEIKN ILVCEGVHRH ERHERLDQWA  420
MHMEESGFHN VQLSFSAIRE GKENLLSFGL KNCQNKEDRG CFLLCWGSTN LYSISLRLCC  480
TDRGMFQDDM LSSATSSPAS SVYSPSPSPS NGSWVQELSH DQQSVRLIGL LYQCAAEVSA  540
GSFDRANLCL EHITQLASLD APHALQRLAA VFADALARKL LNLIPGLSRA LLSSANSADA  600
HLVPVARRHM FDVLPFLKLA YLTTNHAILE AMEGERFVHV VDFSGPAANP VQWIALFHAF  660
RGRREGPPHL RITAVHDSKE FLANMAAVLS KEAEAFDIAF QFNAVEAKLD EMDFDALRHD  720
LGVRSGEALA VSVVLQLHRL LAVDDGRRHA ATGCLTPVQI IARSSPRSFG ELLERELNTR  780
LQLSPDASVV SSLSSHSPAA ATAAHPTTST PKLGSFLSAV RSLSPKIMVM TEQEANHNGG  840
AFQERFDEAL NYYASLFDCL QRSAAAAAER ARVERVLLGE EIRGVVACEG AERVERHERA  900
RQWAARMEAA GMERVGLSYS GAMEARKLLQ SCGWAGPYEV RHDAGSHGFF FCWHKRPLYA  960
VTAWRPAASR RGHTRS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-295159667380Protein SCARECROW
5b3h_A1e-295159666379Protein SCARECROW
5b3h_D1e-295159666379Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL9351540.0AL935154.2 Oryza sativa chromosome 12, . BAC OSJNBb0109O08 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619625.10.0scarecrow-like protein 3
TrEMBLA0A0E0J6F60.0A0A0E0J6F6_ORYNI; Uncharacterized protein
STRINGONIVA12G01890.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60438176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.12e-98scarecrow-like 3