PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA12G00200.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 482aa    MW: 53302.2 Da    PI: 7.2889
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA12G00200.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.22.5e-31321377360
                      -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
             WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                      Dgy+WrKYGqK+vkgsefprsYY+Ct+++Cpvk+kve +  d+++ ei+Y+geHnh+k
  ONIVA12G00200.1 321 DGYSWRKYGQKQVKGSEFPRSYYKCTHPTCPVKRKVEMTP-DGRIAEIVYNGEHNHPK 377
                      9***************************************.***************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF540011.69E-3911193No hitNo description
PROSITE profilePS5060013.71719184IPR003653Ulp1 protease family, C-terminal catalytic domain
Gene3DG3DSA:3.30.310.1302.2E-684178No hitNo description
PfamPF029021.0E-591183IPR003653Ulp1 protease family, C-terminal catalytic domain
Gene3DG3DSA:2.20.25.801.5E-27313378IPR003657WRKY domain
PROSITE profilePS5081123.72314378IPR003657WRKY domain
SuperFamilySSF1182901.7E-24316378IPR003657WRKY domain
SMARTSM007741.7E-34319377IPR003657WRKY domain
PfamPF031062.1E-24321376IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006508Biological Processproteolysis
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0019784Molecular FunctionNEDD8-specific protease activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MAHGGGEEEE ERVLSHGDVV LLRCDLTILR GPHFLNDRII AFYLAHLAAD HDADDDLLLL  60
PPSIPYLLSN LPDPASVAAV ADPLRLASRR LVLLPVNDNP DVSHAEGGSH WTLLVLDNSN  120
AVSGPRFVHH DSLPPTNLPF ARRLAAVLRP LLPASAIPLI EGPTPRQTNG YDCGVFVLAV  180
ARAICNWWLT RARHSDSDSD WLEAVKREPF NSTSFSPFDC IYQSLPVTAQ DFGTWCDMQS  240
HKKVAAVKPV ASRPSSRLRS FSMLQEDSTA IDSPRLEDSG THTTYDQKKA DRGKGACWDN  300
LTVSQSVRKP NVSAKNSLSY DGYSWRKYGQ KQVKGSEFPR SYYKCTHPTC PVKRKVEMTP  360
DGRIAEIVYN GEHNHPKPHP PRKPTLSTSV ETLVATNDAG LENKLEGCDQ AIGSDAVVEA  420
LRGGCHCLDG FRNGNEISDC KKRLFRFGVR FHDGSCKRIL AQPHNIINLG SHLVAEYVQE  480
KQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2bkq_A1e-26131955185SENTRIN-SPECIFIC PROTEASE 8
2bkq_B1e-26131955185SENTRIN-SPECIFIC PROTEASE 8
2bkq_C1e-26131955185SENTRIN-SPECIFIC PROTEASE 8
2bkq_D1e-26131955185SENTRIN-SPECIFIC PROTEASE 8
2bkr_A1e-26131955185SENTRIN-SPECIFIC PROTEASE 8
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126200.0CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015617664.10.0uncharacterized protein LOC4349534
TrEMBLA0A0E0J5R30.0A0A0E0J5R3_ORYNI; Uncharacterized protein
STRINGONIVA12G00200.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23252941
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.11e-24WRKY DNA-binding protein 3