PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA11G23190.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | GRAS | ||||||||
Protein Properties | Length: 638aa MW: 71450.8 Da PI: 5.1671 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 340.4 | 3.1e-104 | 258 | 633 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 +lL++cA+av++gd + a++lL+++++++s +gd++qR+a +f+e+L+arla+++s++y++l +++ts +++ l+a+klf ++ i k+s ONIVA11G23190.1 258 HTLLIHCAQAVATGDWRSATELLKQIKQNSSARGDATQRMACCFAEGLEARLAGTGSQMYQSLVAKRTS---TVDFLKAYKLFTAACCIKKVSV 348 679************************************************************999999...8********************* PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrle 187 + N++I++av+g +++Hi+D+++s+G+QWpaL+ L +R++gpp++R+Tg++ p++g ++++eetg+rL+ A+++gvpf+f++ +a ++e ONIVA11G23190.1 349 IFSNKTIYNAVAGRRKLHIVDYGLSYGFQWPALFFLLGAREGGPPEVRMTGIDVPQPGfrPADQIEETGRRLSICARQFGVPFKFRA-IAAKWE 441 *********************************************************9*****************************.799*** PP GRAS 188 dleleeLrvkp....gEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleakl 275 +++ e+L+++p +E+l+Vn+ + l +l desv ++s +rd vL+ +++++P+v+v + + ++++ F++rf eal +ysa fd+l+a++ ONIVA11G23190.1 442 TVRREDLHLDPeeeeEEVLVVNCLHGLNTLQDESVVVDSpsPRDVVLDNIRDMRPHVFVQCVVNGAYGAPFFVTRFREALFFYSAHFDMLDATI 535 **********9999999*****************98888779**************************************************** PP GRAS 276 preseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvs 369 pr+++er +Er +lgr + nv+acega+r+ r et+++W+ r ++aG++++pl+ ++++ ++ ++ + + + ++ ++++l++gWk+r L++ ONIVA11G23190.1 536 PRDNDERLLIERDMLGRCALNVIACEGADRVDRPETYKQWQVRNHRAGLRQLPLEAEVVELVRGKVKSLYHKDFVIDVDHNWLLQGWKGRILYA 629 **********************************************************************888********************* PP GRAS 370 vSaW 373 +S W ONIVA11G23190.1 630 MSTW 633 **** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 59.028 | 231 | 614 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.1E-101 | 258 | 633 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 638 aa Download sequence Send to blast |
MAAAPKPEEL VVAIEQPFSP SLFLDLPPTP HHDDDPNNVN DDLLLPFISR ILMEDDIDDK 60 FFYQFPDHPA LLQAQQSYAQ ILHAPATSSS SDDTTINNNT TNSTSVPDTL AMPDHDADTQ 120 SAPDDMEMLN MAFLKGREEA TKFLPTNNTL FSGFKAEPVL DIQPTFTFGP SGGGRGRKNR 180 HAEEDDLETE TSRSSKLMAP EHDDAAAADE IFDEIILNGY QMIIKGIDEL RVAMGSQSQA 240 DKNGRRASRA KTAVVDLHTL LIHCAQAVAT GDWRSATELL KQIKQNSSAR GDATQRMACC 300 FAEGLEARLA GTGSQMYQSL VAKRTSTVDF LKAYKLFTAA CCIKKVSVIF SNKTIYNAVA 360 GRRKLHIVDY GLSYGFQWPA LFFLLGAREG GPPEVRMTGI DVPQPGFRPA DQIEETGRRL 420 SICARQFGVP FKFRAIAAKW ETVRREDLHL DPEEEEEEVL VVNCLHGLNT LQDESVVVDS 480 PSPRDVVLDN IRDMRPHVFV QCVVNGAYGA PFFVTRFREA LFFYSAHFDM LDATIPRDND 540 ERLLIERDML GRCALNVIAC EGADRVDRPE TYKQWQVRNH RAGLRQLPLE AEVVELVRGK 600 VKSLYHKDFV IDVDHNWLLQ GWKGRILYAM STWVAHHP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 2e-39 | 263 | 634 | 24 | 378 | Protein SCARECROW |
5b3h_D | 2e-39 | 263 | 634 | 24 | 378 | Protein SCARECROW |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC137064 | 0.0 | AC137064.4 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBb0003C04 map S10003, complete sequence. | |||
GenBank | AP014967 | 0.0 | AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015615829.1 | 0.0 | scarecrow-like protein 9 | ||||
TrEMBL | A0A0E0J5K2 | 0.0 | A0A0E0J5K2_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA11G23190.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP231 | 31 | 297 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37650.1 | 1e-138 | GRAS family protein |