PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA11G14140.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 291aa    MW: 31985.9 Da    PI: 10.1168
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA11G14140.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM103.62.6e-32191482128
              NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                       +G+ F+Pt+ elvv+yL +++ +++l++ ++i++vdi  ++Pwd+   + ++++  +fF++++++++++ ++n a+ +g+W+  g++ ++++k
  ONIVA11G14140.1  19 SVGCVFRPTEGELVVNYLYRRAMQEPLPC-DFITDVDIQCHNPWDIV-PAGEKKNGKHFFTRKENSHPRDYESNHAAGDGFWRLAGTEVPIYNK 110
                      68***************************.99**************5.455667899************************************* PP

              NAM  96 .....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                           +++lvg+k+tLvf+  +++++e+t Wvm+e+rl
  ONIVA11G14140.1 111 psggaDEKLVGMKRTLVFHFRKSSSTERTGWVMQEFRL 148
                      999988889**********9999*************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.27E-3415158IPR003441NAC domain
PROSITE profilePS5100532.9218214IPR003441NAC domain
PfamPF023652.0E-1720148IPR003441NAC domain
SuperFamilySSF1019413.27E-34202214IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MAGPGVCINL LNGTTMHLSV GCVFRPTEGE LVVNYLYRRA MQEPLPCDFI TDVDIQCHNP  60
WDIVPAGEKK NGKHFFTRKE NSHPRDYESN HAAGDGFWRL AGTEVPIYNK PSGGADEKLV  120
GMKRTLVFHF RKSSSTERTG WVMQEFRLAG ASLVPCLVMR PATGDVSMPP CGCTKTTTTK  180
KNNGSPSAAH THAPLVETMV EPDNSWMICR IYKKRQRAPQ VIIPPSIGNA REAVLAVPAI  240
GNAGDRQVTS LTSQGIDVSR RGVMSLPMSS QRTRAVMVIG RTNRRKKLGL V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A8e-191414811140Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126190.0CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616648.11e-116NAC transcription factor NAM-1
TrEMBLA0A0E0J2A10.0A0A0E0J2A1_ORYNI; Uncharacterized protein
STRINGONIVA11G14140.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44822369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77450.19e-25NAC domain containing protein 32