PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA11G11880.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 432aa    MW: 44099.6 Da    PI: 7.0193
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA11G11880.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.41.4e-09258305455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  ONIVA11G11880.1 258 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 305
                      8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.93E-17252322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.53E-11252309No hitNo description
PROSITE profilePS5088815.802254304IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.9E-17254321IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-6258305IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.2E-11260310IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MAHDGFLGGG GGSFHALAAW PLPFDAAAAL HGGGWDSDPA LGELVPSPVG VGVHEAALMD  60
ELASRLGGVC GGGLGGGGVP SPPSSSRYAS CYSTPVGSPC KPAPAPPVPS LLAAADAMIA  120
ERAARMSCLA AAGHGGGKLS RAASSQSLLA EPAAAGGVHQ LPASDGSSSD APSRKRKAPG  180
SKARGKDAAT SIAKSPEPGT KAKKCKLSAD AAGDEDTKPV AGDAGHGGNG KGKVLDAAGE  240
PPKDYIHVRA RRGQATDSHS LAERVRREKI SERMKLLQDL VPGCNKVTGK AVMLDEIINY  300
VQSLQRQVEF LSMKLSTVNP QLDFDVDNFI PKDQANDPSM PAPLSLPPPP PPLSYSPEGA  360
SPGICYASSQ GTAMQSVVTS TKHLETAPTF ANHHVIPVPS LDGFHSAHSQ AGSCMWEDDL  420
QSVVQMGFRG NT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015615632.10.0transcription factor BHLH089-like isoform X1
TrEMBLA0A0E0J1I00.0A0A0E0J1I0_ORYNI; Uncharacterized protein
STRINGONIVA11G11880.30.0(Oryza nivara)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.14e-54bHLH family protein