PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA11G11690.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C2H2 | ||||||||
Protein Properties | Length: 452aa MW: 45893.9 Da PI: 5.5283 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.4 | 0.00047 | 117 | 139 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +C k F ++ Hir+H ONIVA11G11690.1 117 FACRICRKEFDTRKAVDGHIRVH 139 78*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 7.76E-5 | 116 | 139 | No hit | No description |
PROSITE profile | PS50157 | 10.076 | 117 | 144 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.038 | 117 | 139 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 119 | 139 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 7.76E-5 | 218 | 247 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 4.8E-4 | 222 | 236 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 9.39 | 223 | 252 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.75 | 223 | 247 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 225 | 247 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 0.0016 | 280 | 303 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 6.3 | 280 | 302 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 8.954 | 280 | 307 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 282 | 302 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 452 aa Download sequence Send to blast |
MEGGNSSKGA MEGGHRCRRP NVDDDDQIEE GEICYDCHVS GSETDDDEHH RRAVLPPRDN 60 GDGCAEHKRC RLDNAATAPA PSAGPVLTTS NGSAIVAIAS AAAAAAAAAS TMAREVFACR 120 ICRKEFDTRK AVDGHIRVHR QQSIATPKYN AADNSRVTVV AEPRTDLDLS GPHGSSSAPP 180 SPPAPPANPP NHNQAVGHQP AAAAPNAGVV VVVEGAPQKS LPYMCKMQGC GRAFPTHQGL 240 GGHAAGHQNR SKAAAAAASE QGSSGAGADG CHGGADSSKH RCRECGMEWK TGFALGGHMR 300 KHQTKEKVTV NEKEPNVAGK HISLGPPPSP DLTPAAAEVT SSEPLDQPPL LSMVVGAEVA 360 APALLALANE AAALPPQDDQ AEEEAAAEAA APAEAAALRP VEAGAEAADV GAAPEEPLLA 420 PIAGMGTVRI FGFLVEKPAP GDGSGGEGSA PA |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC145367 | 0.0 | AC145367.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBb0064J09 map near 50283S, complete sequence. | |||
GenBank | AK110914 | 0.0 | AK110914.1 Oryza sativa Japonica Group cDNA clone:002-173-C05, full insert sequence. | |||
GenBank | AP014967 | 0.0 | AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015616778.1 | 0.0 | myristoylated alanine-rich C-kinase substrate | ||||
TrEMBL | A0A0E0J1G0 | 0.0 | A0A0E0J1G0_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA11G11690.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP17108 | 10 | 12 |