PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA11G08980.9

Organism

Oryza nivara

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Nin-like

Protein Properties

Length: 838aa MW: 92741.1 Da PI: 6.2685

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA11G08980.9	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.2	7.8e-29	564	613	2	51
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiks 51 ek++sl++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rkik+ ONIVA11G08980.9 564 EKSVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKIKK 613 799*********************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	15.448	553	635	IPR003035	RWP-RK domain
Pfam	PF02042	1.2E-25	567	613	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.47E-23	725	820	No hit	No description
Gene3D	G3DSA:3.10.20.240	4.8E-25	731	813	No hit	No description
SMART	SM00666	4.1E-26	734	816	IPR000270	PB1 domain
Pfam	PF00564	7.5E-19	734	815	IPR000270	PB1 domain
PROSITE profile	PS51745	27.129	734	816	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 838 aa Download sequence Send to blast
MDGGGTPDGD PVPDMDMLML SSALDGLDSY TDLVAGSSVA DSIFSALTCF PPSQERLLHV 60 STPVGSNSRQ DDSDVSITKE GTTTRRGDCA AGLASGEPVA AGIGSVPKPF DGVTLTERML 120 RALAMLKEAS GGEAILVQVW MPVRNGEQHV LTTSDQPFLL DQKLTGYREV SRQFTFSAEE 180 GPGLFPGLPG RVFMSGMPEW TSNVMYYHGS EYLRVDYARR HEVRGSLAMP VFNSSGGSCC 240 AVLEVVMTRE KDNFCLEMVN VSNALQAFNN PLFLLCAAQR YAQLQCNTAK YLFKELSTSY 300 SRDQKLALME IFDVLQAVCQ AHLLPLALAW IPVCSKRDVL VSVEYGANFG KRNKEVLCIE 360 ESACYVNDTR MRDFVQVCAE HPLEKGQGVA GNAYLSNNPF FSSDVKDYDM HAYPLVNHAR 420 KFGLHAAVAI RLRSTYTKND DYVLEFFLPV LCKGGGEQQL LLDSISVTMR RVCKSLRTVS 480 DAELKEDVTR KPSNENRSGT RCPSPVNLIY SGREIDVSNE TKTNTPLEYQ IEGIDEQLSD 540 TKSTNKLIKC SNASDGEKRR SSTEKSVSLS VLQQYFSGSL KDAAKSIGVC PTTLKRICRQ 600 HGISRWPSRK IKKNKQNGEI NFDMDDGELF RNSHSTRTLS GAFCEDMPNG LYVAREMTCV 660 AKTGTRTERL EHKPSSRDTF SAPQEYRMES ETDKSNKNSK QSLPSSSSMT DCSTSSGETF 720 KSIKSQSANE SNKTVAVKAS YKNDTIRFKL LPSMKYEQLL EEIAKRLKLS IGLFQLKYKD 780 DEGDWVILAS DADLQECLEI LDTTRLRILK LQVQDVVCPI GSSSERCGFG STVIDLFI

Sequence ? help Back to Top

Protein Sequence Length: 838 aa Download sequence Send to blast

MDGGGTPDGD PVPDMDMLML SSALDGLDSY TDLVAGSSVA DSIFSALTCF PPSQERLLHV  60
STPVGSNSRQ DDSDVSITKE GTTTRRGDCA AGLASGEPVA AGIGSVPKPF DGVTLTERML  120
RALAMLKEAS GGEAILVQVW MPVRNGEQHV LTTSDQPFLL DQKLTGYREV SRQFTFSAEE  180
GPGLFPGLPG RVFMSGMPEW TSNVMYYHGS EYLRVDYARR HEVRGSLAMP VFNSSGGSCC  240
AVLEVVMTRE KDNFCLEMVN VSNALQAFNN PLFLLCAAQR YAQLQCNTAK YLFKELSTSY  300
SRDQKLALME IFDVLQAVCQ AHLLPLALAW IPVCSKRDVL VSVEYGANFG KRNKEVLCIE  360
ESACYVNDTR MRDFVQVCAE HPLEKGQGVA GNAYLSNNPF FSSDVKDYDM HAYPLVNHAR  420
KFGLHAAVAI RLRSTYTKND DYVLEFFLPV LCKGGGEQQL LLDSISVTMR RVCKSLRTVS  480
DAELKEDVTR KPSNENRSGT RCPSPVNLIY SGREIDVSNE TKTNTPLEYQ IEGIDEQLSD  540
TKSTNKLIKC SNASDGEKRR SSTEKSVSLS VLQQYFSGSL KDAAKSIGVC PTTLKRICRQ  600
HGISRWPSRK IKKNKQNGEI NFDMDDGELF RNSHSTRTLS GAFCEDMPNG LYVAREMTCV  660
AKTGTRTERL EHKPSSRDTF SAPQEYRMES ETDKSNKNSK QSLPSSSSMT DCSTSSGETF  720
KSIKSQSANE SNKTVAVKAS YKNDTIRFKL LPSMKYEQLL EEIAKRLKLS IGLFQLKYKD  780
DEGDWVILAS DADLQECLEI LDTTRLRILK LQVQDVVCPI GSSSERCGFG STVIDLFI

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK064859	0.0	AK064859.1 Oryza sativa Japonica Group cDNA clone:J013000H14, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015616882.1	0.0	protein NLP2-like isoform X2
TrEMBL	A0A0E0J0H0	0.0	A0A0E0J0H0_ORYNI; Uncharacterized protein
STRING	ONIVA11G08980.1	0.0	(Oryza nivara)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59580.2	1e-160	Nin-like family protein