PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA11G08980.6

Organism

Oryza nivara

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Nin-like

Protein Properties

Length: 951aa MW: 105177 Da PI: 6.1028

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA11G08980.6	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.6	3e-29	591	641	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rkik++ ONIVA11G08980.6 591 EKSVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKIKKV 641 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.348	580	661	IPR003035	RWP-RK domain
Pfam	PF02042	4.3E-26	594	641	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.73E-23	838	933	No hit	No description
Gene3D	G3DSA:3.10.20.240	5.6E-25	844	926	No hit	No description
Pfam	PF00564	8.9E-19	847	928	IPR000270	PB1 domain
SMART	SM00666	4.1E-26	847	929	IPR000270	PB1 domain
PROSITE profile	PS51745	27.129	847	929	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 951 aa Download sequence Send to blast
MDGGGTPDGD PVPDMDMLML SSALDGLDSY TDLVAGSSVA DSIFSALTCF PPSQERLLHV 60 STPVGSNSRQ DDSDVSITKE GTTTRRGDCA AGLASGEPVA AGIGSVPKPF DGVTLTERML 120 RALAMLKEAS GGEAILVQVW MPVRNGEQHV LTTSDQPFLL DQKLTGYREV SRQFTFSAEE 180 GPGLFPGLPG RVFMSGMPEW TSNVMYYHGS EYLRVDYARR HEVRGSLAMP VFNSSGGSCC 240 AVLEVVMTRE KDNFCLEMVN VSNALQAFNN PLFLLCAAQR YAQLQCNTAK YLFKELSTVA 300 SELNSDIVIL QSVQLSTVNA WRHSQSYSRD QKLALMEIFD VLQAVCQAHL LPLALAWIPV 360 CSKRDVLVSV EYGANFGKRN KEVLCIEESA CYVNDTRMRD FVQVCAEHPL EKGQGVAGNA 420 YLSNNPFFSS DVKDYDMHAY PLVNHARKFG LHAAVAIRLR STYTKNDDYV LEFFLPVLCK 480 GGGEQQLLLD SISVTMRRVC KSLRTVSDAE LKEDVTRKPS NENRSGTRCP SPVNLIYSGR 540 EIDVSNETKT NTPLEYQIEG IDEQLSDTKS TNKLIKCSNA SDGEKRRSST EKSVSLSVLQ 600 QYFSGSLKDA AKSIGVCPTT LKRICRQHGI SRWPSRKIKK VNRSLKKIQN VISSVHGVEG 660 VLKYDPSTGC LVSSVSPSIE PVLMNVEHKG SDPLPIESEL PHLNFEPDCD AYRREHAGQD 720 VLQKLQNKQN GEINFDMDDG ELFRNSHSTR TLSGAFCEDM PNGLYVAREM TCVAKTGTRT 780 ERLEHKPSSR DTFSAPQEYR MESETDKSNK NSKQSLPSSS SMTDCSTSSG ETFKSIKSQS 840 ANESNKTVAV KASYKNDTIR FKLLPSMKYE QLLEEIAKRL KLSIGLFQLK YKDDEGDWVI 900 LASDADLQEC LEILDTTRLR ILKLQVQDVV CPIGSSSERC GFGSTVIDLF I

Sequence ? help Back to Top

Protein Sequence Length: 951 aa Download sequence Send to blast

MDGGGTPDGD PVPDMDMLML SSALDGLDSY TDLVAGSSVA DSIFSALTCF PPSQERLLHV  60
STPVGSNSRQ DDSDVSITKE GTTTRRGDCA AGLASGEPVA AGIGSVPKPF DGVTLTERML  120
RALAMLKEAS GGEAILVQVW MPVRNGEQHV LTTSDQPFLL DQKLTGYREV SRQFTFSAEE  180
GPGLFPGLPG RVFMSGMPEW TSNVMYYHGS EYLRVDYARR HEVRGSLAMP VFNSSGGSCC  240
AVLEVVMTRE KDNFCLEMVN VSNALQAFNN PLFLLCAAQR YAQLQCNTAK YLFKELSTVA  300
SELNSDIVIL QSVQLSTVNA WRHSQSYSRD QKLALMEIFD VLQAVCQAHL LPLALAWIPV  360
CSKRDVLVSV EYGANFGKRN KEVLCIEESA CYVNDTRMRD FVQVCAEHPL EKGQGVAGNA  420
YLSNNPFFSS DVKDYDMHAY PLVNHARKFG LHAAVAIRLR STYTKNDDYV LEFFLPVLCK  480
GGGEQQLLLD SISVTMRRVC KSLRTVSDAE LKEDVTRKPS NENRSGTRCP SPVNLIYSGR  540
EIDVSNETKT NTPLEYQIEG IDEQLSDTKS TNKLIKCSNA SDGEKRRSST EKSVSLSVLQ  600
QYFSGSLKDA AKSIGVCPTT LKRICRQHGI SRWPSRKIKK VNRSLKKIQN VISSVHGVEG  660
VLKYDPSTGC LVSSVSPSIE PVLMNVEHKG SDPLPIESEL PHLNFEPDCD AYRREHAGQD  720
VLQKLQNKQN GEINFDMDDG ELFRNSHSTR TLSGAFCEDM PNGLYVAREM TCVAKTGTRT  780
ERLEHKPSSR DTFSAPQEYR MESETDKSNK NSKQSLPSSS SMTDCSTSSG ETFKSIKSQS  840
ANESNKTVAV KASYKNDTIR FKLLPSMKYE QLLEEIAKRL KLSIGLFQLK YKDDEGDWVI  900
LASDADLQEC LEILDTTRLR ILKLQVQDVV CPIGSSSERC GFGSTVIDLF I

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK064859	0.0	AK064859.1 Oryza sativa Japonica Group cDNA clone:J013000H14, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015616880.1	0.0	protein NLP2-like isoform X1
Refseq	XP_015616881.1	0.0	protein NLP2-like isoform X1
TrEMBL	A0A0E0J0F9	0.0	A0A0E0J0F9_ORYNI; Uncharacterized protein
STRING	ONIVA11G08980.1	0.0	(Oryza nivara)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59580.2	1e-171	Nin-like family protein