PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA11G08980.4

Organism

Oryza nivara

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Nin-like

Protein Properties

Length: 916aa MW: 101519 Da PI: 6.0291

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA11G08980.4	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.6	2.9e-29	556	606	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rkik++ ONIVA11G08980.4 556 EKSVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKIKKV 606 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.348	545	626	IPR003035	RWP-RK domain
Pfam	PF02042	4.1E-26	559	606	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.67E-23	803	898	No hit	No description
Gene3D	G3DSA:3.10.20.240	5.4E-25	809	891	No hit	No description
SMART	SM00666	4.1E-26	812	894	IPR000270	PB1 domain
Pfam	PF00564	8.5E-19	812	893	IPR000270	PB1 domain
PROSITE profile	PS51745	27.129	812	894	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 916 aa Download sequence Send to blast
MDGGGTPDGD PVPDMDMLML SSALDGLDSY TDLVADDSDV SITKEGTTTR RGDCAAGLAS 60 GEPVAAGIGS VPKPFDGVTL TERMLRALAM LKEASGGEAI LVQVWMPVRN GEQHVLTTSD 120 QPFLLDQKLT GYREVSRQFT FSAEEGPGLF PGLPGRVFMS GMPEWTSNVM YYHGSEYLRV 180 DYARRHEVRG SLAMPVFNSS GGSCCAVLEV VMTREKDNFC LEMVNVSNAL QAFNNPLFLL 240 CAAQRYAQLQ CNTAKYLFKE LSTVASELNS DIVILQSVQL STVNAWRHSQ SYSRDQKLAL 300 MEIFDVLQAV CQAHLLPLAL AWIPVCSKRD VLVSVEYGAN FGKRNKEVLC IEESACYVND 360 TRMRDFVQVC AEHPLEKGQG VAGNAYLSNN PFFSSDVKDY DMHAYPLVNH ARKFGLHAAV 420 AIRLRSTYTK NDDYVLEFFL PVLCKGGGEQ QLLLDSISVT MRRVCKSLRT VSDAELKEDV 480 TRKPSNENRS GTRCPSPVNL IYSGREIDVS NETKTNTPLE YQIEGIDEQL SDTKSTNKLI 540 KCSNASDGEK RRSSTEKSVS LSVLQQYFSG SLKDAAKSIG VCPTTLKRIC RQHGISRWPS 600 RKIKKVNRSL KKIQNVISSV HGVEGVLKYD PSTGCLVSSV SPSIEPVLMN VEHKGSDPLP 660 IESELPHLNF EPDCDAYRRE HAGQDVLQKL QNKQNGEINF DMDDGELFRN SHSTRTLSGA 720 FCEDMPNGLY VAREMTCVAK TGTRTERLEH KPSSRDTFSA PQEYRMESET DKSNKNSKQS 780 LPSSSSMTDC STSSGETFKS IKSQSANESN KTVAVKASYK NDTIRFKLLP SMKYEQLLEE 840 IAKRLKLSIG LFQLKYKDDE GDWVILASDA DLQECLEILD TTRLRILKLQ VQDVVCPIGS 900 SSERCGFGST VIDLFI

Sequence ? help Back to Top

Protein Sequence Length: 916 aa Download sequence Send to blast

MDGGGTPDGD PVPDMDMLML SSALDGLDSY TDLVADDSDV SITKEGTTTR RGDCAAGLAS  60
GEPVAAGIGS VPKPFDGVTL TERMLRALAM LKEASGGEAI LVQVWMPVRN GEQHVLTTSD  120
QPFLLDQKLT GYREVSRQFT FSAEEGPGLF PGLPGRVFMS GMPEWTSNVM YYHGSEYLRV  180
DYARRHEVRG SLAMPVFNSS GGSCCAVLEV VMTREKDNFC LEMVNVSNAL QAFNNPLFLL  240
CAAQRYAQLQ CNTAKYLFKE LSTVASELNS DIVILQSVQL STVNAWRHSQ SYSRDQKLAL  300
MEIFDVLQAV CQAHLLPLAL AWIPVCSKRD VLVSVEYGAN FGKRNKEVLC IEESACYVND  360
TRMRDFVQVC AEHPLEKGQG VAGNAYLSNN PFFSSDVKDY DMHAYPLVNH ARKFGLHAAV  420
AIRLRSTYTK NDDYVLEFFL PVLCKGGGEQ QLLLDSISVT MRRVCKSLRT VSDAELKEDV  480
TRKPSNENRS GTRCPSPVNL IYSGREIDVS NETKTNTPLE YQIEGIDEQL SDTKSTNKLI  540
KCSNASDGEK RRSSTEKSVS LSVLQQYFSG SLKDAAKSIG VCPTTLKRIC RQHGISRWPS  600
RKIKKVNRSL KKIQNVISSV HGVEGVLKYD PSTGCLVSSV SPSIEPVLMN VEHKGSDPLP  660
IESELPHLNF EPDCDAYRRE HAGQDVLQKL QNKQNGEINF DMDDGELFRN SHSTRTLSGA  720
FCEDMPNGLY VAREMTCVAK TGTRTERLEH KPSSRDTFSA PQEYRMESET DKSNKNSKQS  780
LPSSSSMTDC STSSGETFKS IKSQSANESN KTVAVKASYK NDTIRFKLLP SMKYEQLLEE  840
IAKRLKLSIG LFQLKYKDDE GDWVILASDA DLQECLEILD TTRLRILKLQ VQDVVCPIGS  900
SSERCGFGST VIDLFI

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK064859	0.0	AK064859.1 Oryza sativa Japonica Group cDNA clone:J013000H14, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015616880.1	0.0	protein NLP2-like isoform X1
Refseq	XP_015616881.1	0.0	protein NLP2-like isoform X1
TrEMBL	A0A0E0J0G5	0.0	A0A0E0J0G5_ORYNI; Uncharacterized protein
STRING	ONIVA11G08980.1	0.0	(Oryza nivara)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59580.2	1e-172	Nin-like family protein