PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA11G08980.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | Nin-like | ||||||||
Protein Properties | Length: 923aa MW: 101987 Da PI: 6.4608 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 92.6 | 2.9e-29 | 591 | 641 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rkik++ ONIVA11G08980.3 591 EKSVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKIKKV 641 799**********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 17.348 | 580 | 661 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 4.1E-26 | 594 | 641 | IPR003035 | RWP-RK domain |
SuperFamily | SSF54277 | 1.67E-23 | 810 | 905 | No hit | No description |
Gene3D | G3DSA:3.10.20.240 | 5.4E-25 | 816 | 898 | No hit | No description |
SMART | SM00666 | 4.1E-26 | 819 | 901 | IPR000270 | PB1 domain |
PROSITE profile | PS51745 | 27.129 | 819 | 901 | IPR000270 | PB1 domain |
Pfam | PF00564 | 8.6E-19 | 819 | 900 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 923 aa Download sequence Send to blast |
MDGGGTPDGD PVPDMDMLML SSALDGLDSY TDLVAGSSVA DSIFSALTCF PPSQERLLHV 60 STPVGSNSRQ DDSDVSITKE GTTTRRGDCA AGLASGEPVA AGIGSVPKPF DGVTLTERML 120 RALAMLKEAS GGEAILVQVW MPVRNGEQHV LTTSDQPFLL DQKLTGYREV SRQFTFSAEE 180 GPGLFPGLPG RVFMSGMPEW TSNVMYYHGS EYLRVDYARR HEVRGSLAMP VFNSSGGSCC 240 AVLEVVMTRE KDNFCLEMVN VSNALQAFNN PLFLLCAAQR YAQLQCNTAK YLFKELSTVA 300 SELNSDIVIL QSVQLSTVNA WRHSQSYSRD QKLALMEIFD VLQAVCQAHL LPLALAWIPV 360 CSKRDVLVSV EYGANFGKRN KEVLCIEESA CYVNDTRMRD FVQVCAEHPL EKGQGVAGNA 420 YLSNNPFFSS DVKDYDMHAY PLVNHARKFG LHAAVAIRLR STYTKNDDYV LEFFLPVLCK 480 GGGEQQLLLD SISVTMRRVC KSLRTVSDAE LKEDVTRKPS NENRSGTRCP SPVNLIYSGR 540 EIDVSNETKT NTPLEYQIEG IDEQLSDTKS TNKLIKCSNA SDGEKRRSST EKSVSLSVLQ 600 QYFSGSLKDA AKSIGVCPTT LKRICRQHGI SRWPSRKIKK VNRSLKKIQN VISSVHGVEG 660 VLKYDPSTGC LVSSVSPSIE PVLMNVEHKG QDVLQKLQNK QNGEINFDMD DGELFRNSHS 720 TRTLSGAFCE DMPNGLYVAR EMTCVAKTGT RTERLEHKPS SRDTFSAPQE YRMESETDKS 780 NKNSKQSLPS SSSMTDCSTS SGETFKSIKS QSANESNKTV AVKASYKNDT IRFKLLPSMK 840 YEQLLEEIAK RLKLSIGLFQ LKYKDDEGDW VILASDADLQ ECLEILDTTR LRILKLQVQD 900 VVCPIGSSSE RCGFGSTVID LFI |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK064859 | 0.0 | AK064859.1 Oryza sativa Japonica Group cDNA clone:J013000H14, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015616882.1 | 0.0 | protein NLP2-like isoform X2 | ||||
TrEMBL | A0A0E0J0G4 | 0.0 | A0A0E0J0G4_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA11G08980.1 | 0.0 | (Oryza nivara) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G59580.2 | 1e-172 | Nin-like family protein |