PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA11G08980.3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Nin-like
Protein Properties Length: 923aa    MW: 101987 Da    PI: 6.4608
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA11G08980.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK92.62.9e-29591641252
           RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                      ek++sl++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rkik++
  ONIVA11G08980.3 591 EKSVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKIKKV 641
                      799**********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.348580661IPR003035RWP-RK domain
PfamPF020424.1E-26594641IPR003035RWP-RK domain
SuperFamilySSF542771.67E-23810905No hitNo description
Gene3DG3DSA:3.10.20.2405.4E-25816898No hitNo description
SMARTSM006664.1E-26819901IPR000270PB1 domain
PROSITE profilePS5174527.129819901IPR000270PB1 domain
PfamPF005648.6E-19819900IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 923 aa     Download sequence    Send to blast
MDGGGTPDGD PVPDMDMLML SSALDGLDSY TDLVAGSSVA DSIFSALTCF PPSQERLLHV  60
STPVGSNSRQ DDSDVSITKE GTTTRRGDCA AGLASGEPVA AGIGSVPKPF DGVTLTERML  120
RALAMLKEAS GGEAILVQVW MPVRNGEQHV LTTSDQPFLL DQKLTGYREV SRQFTFSAEE  180
GPGLFPGLPG RVFMSGMPEW TSNVMYYHGS EYLRVDYARR HEVRGSLAMP VFNSSGGSCC  240
AVLEVVMTRE KDNFCLEMVN VSNALQAFNN PLFLLCAAQR YAQLQCNTAK YLFKELSTVA  300
SELNSDIVIL QSVQLSTVNA WRHSQSYSRD QKLALMEIFD VLQAVCQAHL LPLALAWIPV  360
CSKRDVLVSV EYGANFGKRN KEVLCIEESA CYVNDTRMRD FVQVCAEHPL EKGQGVAGNA  420
YLSNNPFFSS DVKDYDMHAY PLVNHARKFG LHAAVAIRLR STYTKNDDYV LEFFLPVLCK  480
GGGEQQLLLD SISVTMRRVC KSLRTVSDAE LKEDVTRKPS NENRSGTRCP SPVNLIYSGR  540
EIDVSNETKT NTPLEYQIEG IDEQLSDTKS TNKLIKCSNA SDGEKRRSST EKSVSLSVLQ  600
QYFSGSLKDA AKSIGVCPTT LKRICRQHGI SRWPSRKIKK VNRSLKKIQN VISSVHGVEG  660
VLKYDPSTGC LVSSVSPSIE PVLMNVEHKG QDVLQKLQNK QNGEINFDMD DGELFRNSHS  720
TRTLSGAFCE DMPNGLYVAR EMTCVAKTGT RTERLEHKPS SRDTFSAPQE YRMESETDKS  780
NKNSKQSLPS SSSMTDCSTS SGETFKSIKS QSANESNKTV AVKASYKNDT IRFKLLPSMK  840
YEQLLEEIAK RLKLSIGLFQ LKYKDDEGDW VILASDADLQ ECLEILDTTR LRILKLQVQD  900
VVCPIGSSSE RCGFGSTVID LFI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0648590.0AK064859.1 Oryza sativa Japonica Group cDNA clone:J013000H14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616882.10.0protein NLP2-like isoform X2
TrEMBLA0A0E0J0G40.0A0A0E0J0G4_ORYNI; Uncharacterized protein
STRINGONIVA11G08980.10.0(Oryza nivara)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59580.21e-172Nin-like family protein