PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA11G08980.11 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | Nin-like | ||||||||
Protein Properties | Length: 924aa MW: 102200 Da PI: 6.1298 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 92.6 | 2.9e-29 | 564 | 614 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rkik++ ONIVA11G08980.11 564 EKSVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKIKKV 614 799**********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 17.348 | 553 | 634 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 4.1E-26 | 567 | 614 | IPR003035 | RWP-RK domain |
SuperFamily | SSF54277 | 1.67E-23 | 811 | 906 | No hit | No description |
Gene3D | G3DSA:3.10.20.240 | 5.4E-25 | 817 | 899 | No hit | No description |
Pfam | PF00564 | 8.6E-19 | 820 | 901 | IPR000270 | PB1 domain |
SMART | SM00666 | 4.1E-26 | 820 | 902 | IPR000270 | PB1 domain |
PROSITE profile | PS51745 | 27.129 | 820 | 902 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 924 aa Download sequence Send to blast |
MDGGGTPDGD PVPDMDMLML SSALDGLDSY TDLVAGSSVA DSIFSALTCF PPSQERLLHV 60 STPVGSNSRQ DDSDVSITKE GTTTRRGDCA AGLASGEPVA AGIGSVPKPF DGVTLTERML 120 RALAMLKEAS GGEAILVQVW MPVRNGEQHV LTTSDQPFLL DQKLTGYREV SRQFTFSAEE 180 GPGLFPGLPG RVFMSGMPEW TSNVMYYHGS EYLRVDYARR HEVRGSLAMP VFNSSGGSCC 240 AVLEVVMTRE KDNFCLEMVN VSNALQAFNN PLFLLCAAQR YAQLQCNTAK YLFKELSTSY 300 SRDQKLALME IFDVLQAVCQ AHLLPLALAW IPVCSKRDVL VSVEYGANFG KRNKEVLCIE 360 ESACYVNDTR MRDFVQVCAE HPLEKGQGVA GNAYLSNNPF FSSDVKDYDM HAYPLVNHAR 420 KFGLHAAVAI RLRSTYTKND DYVLEFFLPV LCKGGGEQQL LLDSISVTMR RVCKSLRTVS 480 DAELKEDVTR KPSNENRSGT RCPSPVNLIY SGREIDVSNE TKTNTPLEYQ IEGIDEQLSD 540 TKSTNKLIKC SNASDGEKRR SSTEKSVSLS VLQQYFSGSL KDAAKSIGVC PTTLKRICRQ 600 HGISRWPSRK IKKVNRSLKK IQNVISSVHG VEGVLKYDPS TGCLVSSVSP SIEPVLMNVE 660 HKGSDPLPIE SELPHLNFEP DCDAYRREHA GQDVLQKLQN KQNGEINFDM DDGELFRNSH 720 STRTLSGAFC EDMPNGLYVA REMTCVAKTG TRTERLEHKP SSRDTFSAPQ EYRMESETDK 780 SNKNSKQSLP SSSSMTDCST SSGETFKSIK SQSANESNKT VAVKASYKND TIRFKLLPSM 840 KYEQLLEEIA KRLKLSIGLF QLKYKDDEGD WVILASDADL QECLEILDTT RLRILKLQVQ 900 DVVCPIGSSS ERCGFGSTVI DLFI |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK064859 | 0.0 | AK064859.1 Oryza sativa Japonica Group cDNA clone:J013000H14, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015616880.1 | 0.0 | protein NLP2-like isoform X1 | ||||
Refseq | XP_015616881.1 | 0.0 | protein NLP2-like isoform X1 | ||||
TrEMBL | A0A0E0J0G1 | 0.0 | A0A0E0J0G1_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA11G08980.1 | 0.0 | (Oryza nivara) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G59580.2 | 1e-174 | Nin-like family protein |