PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA11G08980.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | Nin-like | ||||||||
Protein Properties | Length: 952aa MW: 105092 Da PI: 6.1995 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 92.5 | 3e-29 | 592 | 642 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rkik++ ONIVA11G08980.10 592 EKSVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKIKKV 642 799**********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 17.348 | 581 | 662 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 4.3E-26 | 595 | 642 | IPR003035 | RWP-RK domain |
SuperFamily | SSF54277 | 1.73E-23 | 839 | 934 | No hit | No description |
Gene3D | G3DSA:3.10.20.240 | 5.6E-25 | 845 | 927 | No hit | No description |
PROSITE profile | PS51745 | 27.129 | 848 | 930 | IPR000270 | PB1 domain |
Pfam | PF00564 | 8.9E-19 | 848 | 929 | IPR000270 | PB1 domain |
SMART | SM00666 | 4.1E-26 | 848 | 930 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 952 aa Download sequence Send to blast |
MPPLPISPLT RTVNSSLFHF LFSSSSPPAA SGRPASRAEQ RREPTSIWAP IEAEAVRIEK 60 MDGGGTPDGD PVPDMDMLML SSALDGLDSY TDLVAGSSVA DSIFSALTCF PPSQERLLHV 120 STPVGSNSRQ DDSDVSITKE GTTTRRGDCA AGLASGEPVA AGIGSVPKPF DGVTLTERML 180 RALAMLKEAS GGEAILVQVW MPVRNGEQHV LTTSDQPFLL DQKLTGYREV SRQFTFSAEE 240 GPGLFPGLPG RVFMSGMPEW TSNVMYYHGS EYLRVDYARR HEVRGSLAMP VFNSSGGSCC 300 AVLEVVMTRE KDNFCLEMVN VSNALQSYSR DQKLALMEIF DVLQAVCQAH LLPLALAWIP 360 VCSKRDVLVS VEYGANFGKR NKEVLCIEES ACYVNDTRMR DFVQVCAEHP LEKGQGVAGN 420 AYLSNNPFFS SDVKDYDMHA YPLVNHARKF GLHAAVAIRL RSTYTKNDDY VLEFFLPVLC 480 KGGGEQQLLL DSISVTMRRV CKSLRTVSDA ELKEDVTRKP SNENRSGTRC PSPVNLIYSG 540 REIDVSNETK TNTPLEYQIE GIDEQLSDTK STNKLIKCSN ASDGEKRRSS TEKSVSLSVL 600 QQYFSGSLKD AAKSIGVCPT TLKRICRQHG ISRWPSRKIK KVNRSLKKIQ NVISSVHGVE 660 GVLKYDPSTG CLVSSVSPSI EPVLMNVEHK GSDPLPIESE LPHLNFEPDC DAYRREHAGQ 720 DVLQKLQNKQ NGEINFDMDD GELFRNSHST RTLSGAFCED MPNGLYVARE MTCVAKTGTR 780 TERLEHKPSS RDTFSAPQEY RMESETDKSN KNSKQSLPSS SSMTDCSTSS GETFKSIKSQ 840 SANESNKTVA VKASYKNDTI RFKLLPSMKY EQLLEEIAKR LKLSIGLFQL KYKDDEGDWV 900 ILASDADLQE CLEILDTTRL RILKLQVQDV VCPIGSSSER CGFGSTVIDL FI |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK064859 | 0.0 | AK064859.1 Oryza sativa Japonica Group cDNA clone:J013000H14, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015616880.1 | 0.0 | protein NLP2-like isoform X1 | ||||
Refseq | XP_015616881.1 | 0.0 | protein NLP2-like isoform X1 | ||||
TrEMBL | A0A0E0J0G0 | 0.0 | A0A0E0J0G0_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA11G08980.1 | 0.0 | (Oryza nivara) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G59580.2 | 1e-174 | Nin-like family protein |