PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA11G04890.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 734aa    MW: 77010 Da    PI: 7.4336
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA11G04890.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM60.55.5e-191873213128
              NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyat.gkrk.nratk..sgyWkatgkdkev 92 
                      p f+F+Ptd ++v  yL +++   + ++  vi++ d+ ++ePw+L +++ + ++   fF++ +++    g+rk +ra+k   g+W+ + ++ ++
  ONIVA11G04890.1 187 PAFKFDPTDADIVASYLLPRALYGRGHA-AVIQD-DVSRCEPWTLMREHGHATSAHAFFVHDHESVGGgGRRKvQRAVKngGGVWRIQKSEVAI 278
                      78******************99999777.55655.**********855444444445666666655541444325665545789*******999 PP

              NAM  93 lsk.........kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      l+          +  +v  ++ L f+  r+ +++++ Wvmhey++
  ONIVA11G04890.1 279 LTIvrgggggggELDVVYKRRNLSFH--RRGESSSSGWVMHEYEI 321
                      98777777664433449999******..5555679********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF030181.2E-28197IPR004265Plant disease resistance response protein
PfamPF030181.7E-1499149IPR004265Plant disease resistance response protein
SuperFamilySSF1019414.58E-25174336IPR003441NAC domain
PROSITE profilePS5100523.017185337IPR003441NAC domain
PfamPF023653.1E-13187321IPR003441NAC domain
PfamPF030181.9E-49407546IPR004265Plant disease resistance response protein
PfamPF030186.9E-50588732IPR004265Plant disease resistance response protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 734 aa     Download sequence    Send to blast
MHVYWHDVVT GPNSMVAKVA EAPTSRASAT VFGTVYVIDD PLTDGPSLTA PSRLVGHVQG  60
MYVSAGKETM SLLMAMSFVF AADEPYNGSS VAIFGPNPEP YNGSSVAIFG PNPARPVREI  120
PVVGGTGAFR FARGYCRTTT YWYNAAGDAT TSSAAEALAA VREDEERVAV AGMEAWRFGF  180
SRFSWFPAFK FDPTDADIVA SYLLPRALYG RGHAAVIQDD VSRCEPWTLM REHGHATSAH  240
AFFVHDHESV GGGGRRKVQR AVKNGGGVWR IQKSEVAILT IVRGGGGGGG ELDVVYKRRN  300
LSFHRRGESS SSGWVMHEYE ITSPPLPATV LSRIRATPRA KDKKLCIKEE PSCSTSAAGD  360
GDGERSGPNP DHTAAGAAMA ASSSSFVFAS ALLVLAAATA AQAQRETKLR VFWHDVVSGG  420
PNSTVAQVAE APTTNASATG FGAVVVIDDP LTDGPNLTAS RLVGRAQGMY VAAGKDALSL  480
MMAMNFVFAG DGPYNGSSLA ILGANPAERA VREMPVVGGT GVFRFARGYC QATTWWFNAT  540
TGDATLARSA QAPAAAMAKA ALQLLLLLCV AAVAWAADDG GGGSAGMTKI KVYWHDVVAG  600
PNPTAIRVAQ AASTNASSTY FGAVVAIDDP LTSSPAAAAA GELVGRAQGT YTFADQRVIG  660
LLMDMNFVFT AGDHNGSSLA IMGRNEVMSP VREMSIVGGS GKFRMARGYA EARTVDSGFK  720
SGETIVEYTL FVKA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126190.0CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0IYX30.0A0A0E0IYX3_ORYNI; Uncharacterized protein
STRINGONIVA11G04890.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143011926
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.12e-09Arabidopsis NAC domain containing protein 87