PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA11G03770.1

Organism

Oryza nivara

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 903aa MW: 98073.6 Da PI: 6.3047

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA11G03770.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.1	0.00074	708	745	13	55
HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 R+ i +++ eLre++P+ a K s + Lek+v+++ Lq ONIVA11G03770.1 708 RQLIQDRIKELREMVPNgA------KCSIDALLEKTVKHMLFLQ 745 67799**********66......999999******99998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	1.3E-30	6	162	IPR025610	Transcription factor MYC/MYB N-terminal
PROSITE profile	PS50888	10.493	695	744	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.7E-4	708	757	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 903 aa Download sequence Send to blast
MAVGDALRRL CEEVGWSYAV FWKAIGAADP VHLVWEDGYC GHASCPAGSD PSEALPTDVG 60 CAAAADTMTM CSLVNKVMAS QVHVVGEGTV GRAAFTGNHQ WIIHGTANDH GIPSEVAAEM 120 SYQFRVGIQT IAIIPVLPRG VLQLGSTGVV LENKSFMTHA KKLCSQLNNR SSMAVSSSVK 180 NSSSQQGRSR PLHGASNVQS TENRSKLFSQ FPVTCEQYNH PDTMAVSGSS TSLNACMNGS 240 LLKIAQLNGQ AVREHIVYSK PDVRFIQQVY RDGQLGSNAQ SIAMSSDLIS SSLRSVQKQP 300 LLMNNISQLE YGDGAETSAD LRKNVLLKPP VCLDPFIHDR NINISHGITE VSNVINDHGN 360 FDFLSGGARV VRANLCTSAT SQVLDRRSHS VSGMLLHREP IVSCEVPQSS EFSTKMGSLE 420 RGSFQISSAP SSESDVQISN GLNTSISREN QLSVSNHICQ DQKINGVNDL SATLSTERMN 480 NMDGCKPPGL SLERTSPLFM EQSVENDLFD ILGPQFHHLC HNAGADLVPW TDAKPESSDR 540 DVPESSIHAD SAPLFSSRDN ELYSGIFSLT DTDQLLDAVI SNVNPAGKQS SDDSASCKTS 600 LTDIPATSYL CSKEMKQCGS SGVPSVLIKN ESAQFIKQPC LAENAEDGCL SQNNGMHKSQ 660 IRLWIESGQS MKCESASTSN SKGLDTPSKA NRKRSRPGES PKPRPKDRQL IQDRIKELRE 720 MVPNGAKCSI DALLEKTVKH MLFLQSVTKH ADKLKDSTES KILGSENGPV WKDYFEGGAT 780 WAFDVGSQSM TCPIIVEDLD RPRQMLVEMI CEDRGIFLEI ADFIKGLGLT ILRGAMEARK 840 SKIWARFTVE ANRDVTRMEI FLSLVRLLEP NCDSSGAAEN ANNVNMPLGL VHQPVIPATG 900 RIQ

Sequence ? help Back to Top

Protein Sequence Length: 903 aa Download sequence Send to blast

MAVGDALRRL CEEVGWSYAV FWKAIGAADP VHLVWEDGYC GHASCPAGSD PSEALPTDVG  60
CAAAADTMTM CSLVNKVMAS QVHVVGEGTV GRAAFTGNHQ WIIHGTANDH GIPSEVAAEM  120
SYQFRVGIQT IAIIPVLPRG VLQLGSTGVV LENKSFMTHA KKLCSQLNNR SSMAVSSSVK  180
NSSSQQGRSR PLHGASNVQS TENRSKLFSQ FPVTCEQYNH PDTMAVSGSS TSLNACMNGS  240
LLKIAQLNGQ AVREHIVYSK PDVRFIQQVY RDGQLGSNAQ SIAMSSDLIS SSLRSVQKQP  300
LLMNNISQLE YGDGAETSAD LRKNVLLKPP VCLDPFIHDR NINISHGITE VSNVINDHGN  360
FDFLSGGARV VRANLCTSAT SQVLDRRSHS VSGMLLHREP IVSCEVPQSS EFSTKMGSLE  420
RGSFQISSAP SSESDVQISN GLNTSISREN QLSVSNHICQ DQKINGVNDL SATLSTERMN  480
NMDGCKPPGL SLERTSPLFM EQSVENDLFD ILGPQFHHLC HNAGADLVPW TDAKPESSDR  540
DVPESSIHAD SAPLFSSRDN ELYSGIFSLT DTDQLLDAVI SNVNPAGKQS SDDSASCKTS  600
LTDIPATSYL CSKEMKQCGS SGVPSVLIKN ESAQFIKQPC LAENAEDGCL SQNNGMHKSQ  660
IRLWIESGQS MKCESASTSN SKGLDTPSKA NRKRSRPGES PKPRPKDRQL IQDRIKELRE  720
MVPNGAKCSI DALLEKTVKH MLFLQSVTKH ADKLKDSTES KILGSENGPV WKDYFEGGAT  780
WAFDVGSQSM TCPIIVEDLD RPRQMLVEMI CEDRGIFLEI ADFIKGLGLT ILRGAMEARK  840
SKIWARFTVE ANRDVTRMEI FLSLVRLLEP NCDSSGAAEN ANNVNMPLGL VHQPVIPATG  900
RIQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC133217	0.0	AC133217.2 Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0052H02, complete sequence.
GenBank	AP014967	0.0	AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015616921.1	0.0	transcription factor LHW isoform X1
TrEMBL	A0A0E0IYH5	0.0	A0A0E0IYH5_ORYNI; Uncharacterized protein
STRING	ONIVA11G03770.1	0.0	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2654	32	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31280.1	2e-54	conserved peptide upstream open reading frame 7