PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA11G03290.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 633aa    MW: 65818.3 Da    PI: 8.5798
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA11G03290.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.61.7e-11425468553
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIks 53 
                      h + ErrRR+r+N++fe Lr llP+       K +Ka++L k+ eY++ 
  ONIVA11G03290.1 425 HMISERRRRERLNESFEHLRGLLPPG-----SKKDKATVLAKTLEYMNL 468
                      8899********************95.....599************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.75E-16419490IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.212420469IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.6E-15424489IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-9425468IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.1E-11426475IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.75E-5435469No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 633 aa     Download sequence    Send to blast
MDTIFVLGQE SRQRILHRAA ARLPGCAYVC AWAPLPLVAA AGLHHQRPSS GGAAGAARLL  60
YCVDGWLSGG EDGGGCVRVL FDAYRGSVCG AVTGCVPGWA YVGGGGGAFM ELSELELVAS  120
ASLPVQQSFY QEAGIKMAAF MGCESGEIEV GFSTAPAENY GGGGGGGSLQ ASVEQVFSED  180
FFQQSLLEEL LQLPPTRPSS SSSSLVGSPA DGAASTSLLR TMTPMMASSS ATPSPRELAA  240
QVATTTTTTP SSSSRLHPRP PAPHHVHVSP FSRHGGVGGS GVLHFPSAEA DDAAMAQAML  300
DVISSPSTSS SAAALHAPWS SVKHRAQIIR SPRRGTPTTT AFRAYNAALA PRAAASRRPP  360
GAPGQRMIKM GFSILRRMHM VRCSQERAAA AAAAASAAAG QRSGGDDDED ATAAPPPPTS  420
SQLHHMISER RRRERLNESF EHLRGLLPPG SKKDKATVLA KTLEYMNLLI AQISELEAKN  480
RALQTQIHQR ANGSSSSRSS MIRTVNEVHH HHHHQWLAVA AAAGGSPERV QVHVIGGGDH  540
DGGASASSSS SAPEVTVRVA VRAPERGGAD VSELVLRVLA LLKAMGGFTV VAVDARQPGG  600
GGGNGVAQAS LTLRATLVYY LELLHFVFIV MGS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1428433ERRRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623939.10.0putative transcription factor bHLH041
TrEMBLA0A0E0IYB40.0A0A0E0IYB4_ORYNI; Uncharacterized protein
STRINGONIVA11G03290.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39773367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.12e-12bHLH family protein