PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA11G02770.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 334aa    MW: 36499.5 Da    PI: 8.4819
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA11G02770.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM34.27.6e-1116526813128
              NAM  13 elvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktL 106
                      +l+++yL + ++gk+++     +e  i++++    p++   e+    fF++ ++++ +++rk+r++ +g+W  + + k v++k g +vg  + +
  ONIVA11G02770.1 165 DLITFYLPRLIAGKPTKD----TEKFICRADFAPVPRC---EKGGRLFFTSCKRHKGSSTRKERTAGDGTWVRQNS-KGVKNKAGVKVGETQNF 250
                      7999*********99777....4556777777778833...44577999999999999**************8866.889999*********** PP

              NAM 107 vfykgrapkgektdWvmheyrl 128
                       f     ++g+ tdW+m+e + 
  ONIVA11G02770.1 251 RFK----KDGSYTDWLMEEHHC 268
                      **7....78999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF078592.7E-1312138IPR013094Alpha/beta hydrolase fold-3
SuperFamilySSF534741.38E-1312162IPR029058Alpha/Beta hydrolase fold
Gene3DG3DSA:3.40.50.18201.6E-2112158IPR029058Alpha/Beta hydrolase fold
PROSITE profilePS5100510.198153288IPR003441NAC domain
PfamPF023651.7E-6165267IPR003441NAC domain
SuperFamilySSF1019413.14E-11165288IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0016787Molecular Functionhydrolase activity
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MHWSISIRAW IAGGVLVHNV AARAGEAGAE ALDPIRLAGG VQLHPGFILP EKSPSELENP  60
PTPFMTHARV AGRHQPYTSP AAAVTAAEGA QLPPMLVMVA EEDMLRDAQT EYGEAMARAG  120
KAVEKVVSRG RGIGHVFYLN WFAVESDPVA AARARELVDA VKNFDLITFY LPRLIAGKPT  180
KDTEKFICRA DFAPVPRCEK GGRLFFTSCK RHKGSSTRKE RTAGDGTWVR QNSKGVKNKA  240
GVKVGETQNF RFKKDGSYTD WLMEEHHCCR QQAVAGDEEP VICRMYVSPR APPDSAARQE  300
SAAFVQQQPA PQVSEPPCDK RKRDDVAEEA PAAA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126190.0CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619129.11e-115NAC domain-containing protein 41
TrEMBLA0A0E0IY380.0A0A0E0IY38_ORYNI; Uncharacterized protein
STRINGONIVA11G02770.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18322799