PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA11G02590.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 414aa    MW: 44097.4 Da    PI: 9.9934
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA11G02590.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM31.45.3e-1026434829110
              NAM  29 eleevikevdiykvePwdLp.k.....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfyk 110
                      ++e++i ++d+y +eP+dL  k     +   e+   +fF++ ++++ ++++k+r++ +g+W  + + kev++k g +vg  + + f k
  ONIVA11G02590.1 264 DTEKFICRADVYGSEPSDLAgKfapvpR--CEKGGRFFFTSCKRHKGSSTKKERTAGAGTWVRQNS-KEVKNKAGVKVGETQNFRFKK 348
                      3445699************843454222..255588**************************8866.999999********9999975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.18201.8E-1377123IPR029058Alpha/Beta hydrolase fold
PfamPF078591.9E-9156234IPR013094Alpha/beta hydrolase fold-3
SuperFamilySSF534742.37E-8162254IPR029058Alpha/Beta hydrolase fold
Gene3DG3DSA:3.40.50.18201.8E-13169250IPR029058Alpha/Beta hydrolase fold
SuperFamilySSF1019411.96E-9265367IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0016787Molecular Functionhydrolase activity
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MATLPQMAAT KERQEAANPT TTTRTLVESV TNWIRVYSDG SVDRLGPPEA AAFTFISTAA  60
ASACPTPRGR STTASTPASP WTSTSRASSP SSSRSRRSTA YPPPSTPDTP RCSGSVTSRP  120
GAATPSHILR SNAFAAPPTS HACSSSATAR AASSCTTWRH APARLGPRRS TRYASPAAAV  180
TAAEGAQLPP MLVMVAEEDM LRDAQVEYGE AMARAGKAVE TVVSHGRGIG HVFYLNWFAV  240
ESHPVAAARA RELVDAVKSF PMKDTEKFIC RADVYGSEPS DLAGKFAPVP RCEKGGRFFF  300
TSCKRHKGSS TKKERTAGAG TWVRQNSKEV KNKAGVKVGE TQNFRFKKDG SYTVAGDEEP  360
VICRMYVSPR APPDSAARQE SAAFVQQQPA PQVSEPPCDK KKRDDVAEEA PAAA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126190.0CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.
GenBankFQ3780340.0FQ378034.1 Oryza glaberrima chromosome 11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0IY160.0A0A0E0IY16_ORYNI; Uncharacterized protein
STRINGONIVA11G02590.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18322799