PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA11G00470.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TCP
Protein Properties Length: 141aa    MW: 15545.9 Da    PI: 11.9728
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA11G00470.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP94.32.5e-29151272116
              TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt................ssssaseceaesss 79 
                      agkkd+hsk+ T++g+RdR vRls++ a+ f+d+qd+LG+d++sk ieWL+++a +ai++  ++                            ++
  ONIVA11G00470.1  15 AGKKDKHSKVVTSRGLRDRCVRLSVPMAIAFYDIQDRLGVDQPSKSIEWLIRAAAAAIDAFLSLdcslvlpnaaqlltrwR-----------RR 97 
                      79**************************************************************66555433333333331...........22 PP

              TCP  80 ssasnsssgkaaksaakskksqksaasalnlakesra 116
                       s++++s+++a++ +a+   s         ++ e+r 
  ONIVA11G00470.1  98 PSSGQPSEEQARTRKATVAVS-------PRKSGEKRR 127
                      222222222111111111111.......111112222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.8E-2916127IPR005333Transcription factor, TCP
PROSITE profilePS5136928.481775IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
MAAAWRTSQV ARVVAGKKDK HSKVVTSRGL RDRCVRLSVP MAIAFYDIQD RLGVDQPSKS  60
IEWLIRAAAA AIDAFLSLDC SLVLPNAAQL LTRWRRRPSS GQPSEEQART RKATVAVSPR  120
KSGEKRRKTR SGCAVRSASR S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A3e-182273152Putative transcription factor PCF6
5zkt_B3e-182273152Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126190.0CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619107.12e-86transcription factor PCF8-like
SwissprotA2ZMR92e-38PCF8_ORYSI; Transcription factor PCF8
TrEMBLA0A0E0IX556e-95A0A0E0IX55_ORYNI; Uncharacterized protein
TrEMBLA2ZAR06e-95A2ZAR0_ORYSI; Uncharacterized protein
STRINGONIVA11G00470.11e-95(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115532638
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30210.21e-22TCP family protein