PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA10G22030.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 726aa    MW: 78152.3 Da    PI: 6.183
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA10G22030.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH391.5e-12551596454
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      +h e+Er+RR+++N++f  Lr ++P+       K++Ka+ L  A+ YI++L
  ONIVA10G22030.1 551 NHVEAERQRREKLNQRFYALRAVVPNV-----SKMDKASLLGDAISYINEL 596
                      799***********************6.....5***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142159.1E-5195275IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.39547596IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.01E-14550600No hitNo description
SuperFamilySSF474592.62E-18550623IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.8E-10551596IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-18551618IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.6E-16553602IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009269Biological Processresponse to desiccation
GO:0009611Biological Processresponse to wounding
GO:0009737Biological Processresponse to abscisic acid
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009963Biological Processpositive regulation of flavonoid biosynthetic process
GO:0010200Biological Processresponse to chitin
GO:0043619Biological Processregulation of transcription from RNA polymerase II promoter in response to oxidative stress
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051090Biological Processregulation of sequence-specific DNA binding transcription factor activity
GO:2000068Biological Processregulation of defense response to insect
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 726 aa     Download sequence    Send to blast
MDGPDFLAGV LFQIKSNLEE EEIEIKSMNL WTDDNASMME AFMASADLPA FPWGAASTPP  60
PPPPPPHHHH QQQQQQVLPP PAAAPAAAAF NQDTLQQRLQ SIIEGSRETW TYAIFWQSSI  120
DVSTGASLLG WGDGYYKGCD DDKRKQRSST PAAAAEQEHR KRVLRELNSL IAGAGAAPDE  180
AVEEEVTDTE WFFLVSMTQS FPNGLGLPGQ ALFAAQPTWI ATGLSSAPCD RARQAYTFGL  240
RTMVCLPLAT GVLELGSTDV IFQTGDSIPR IRALFNLSAA AASSWPPHPD AASADPSVLW  300
LADAPPMDMK DSISAADISV SKPPPPPPHQ IQHFENGSTS TLTENPSPSV HAPTPSQPAA  360
PPQRQQQQQQ SSQAQQGPFR RELNFSDFAS NGGAAAPPFF KPETGEILNF GNDSSTGRRN  420
PSPAPPAATA SLTTAPGSLF SQHTPTLTAA ANDAKSNNQK RSMEATSRAS NTNNHPAATA  480
NEGMLSFSSA PTTRPSTGTG APAKSESDHS DLEASVREVE SSRVVAPPPE AEKRPRKRGR  540
KPANGREEPL NHVEAERQRR EKLNQRFYAL RAVVPNVSKM DKASLLGDAI SYINELRGKL  600
TALETDKETL QSQMESLKKE RDARPPAPSG GGGDGGARCH AVEIEAKILG LEAMIRVQCH  660
KRNHPAARLM TALRELDLDV YHASVSVVKD LMIQQVAVKM ASRVYSQDQL NAALYTRIAE  720
PGTAAR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A8e-62902784195Transcription factor MYC3
4rqw_B8e-62902784195Transcription factor MYC3
4rs9_A8e-62902784195Transcription factor MYC3
4yz6_A8e-62902784195Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1532540KRPRKRGRK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in jasmonate (JA) signaling pathway during spikelet development. Binds to the G2 region G-box (5'-CACGTG-3') of the MADS1 promoter and thus directly regulates the expression of MADS1. Its function in MADS1 activation is abolished by TIFY3/JAZ1 which directly target MYC2 during spikelet development. {ECO:0000269|PubMed:24647160}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00084PBMTransfer from AT1G32640Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0607550.0AC060755.9 Oryza sativa chromosome 10 BAC OSJNBa0003O19 genomic sequence, complete sequence.
GenBankAK2880820.0AK288082.1 Oryza sativa Japonica Group cDNA, clone: J075172G09, full insert sequence.
GenBankAP0149660.0AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614012.20.0transcription factor MYC2-like
SwissprotQ336P50.0MYC2_ORYSJ; Transcription factor MYC2
TrEMBLA0A0E0IWW70.0A0A0E0IWW7_ORYNI; Uncharacterized protein
STRINGONIVA10G22030.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44523157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32640.11e-131bHLH family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Cai Q, et al.
    Jasmonic acid regulates spikelet development in rice.
    Nat Commun, 2014. 5: p. 3476
    [PMID:24647160]