PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | ONIVA10G21000.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 286aa MW: 29499.5 Da PI: 4.4779 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.2 | 1.7e-17 | 94 | 144 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr + +g+Wv+eIr+p++ + r++lg+f ta++Aa+a++ a+++++g ONIVA10G21000.1 94 PVYRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFPTADMAARAHDVAALAIKG 144 68*****998.**********843...6***********************9987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51257 | 5 | 1 | 24 | No hit | No description |
Pfam | PF00847 | 3.5E-12 | 94 | 144 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.6E-34 | 95 | 158 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.117 | 95 | 152 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.64E-21 | 95 | 153 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 9.4E-32 | 95 | 153 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.95E-30 | 96 | 154 | No hit | No description |
PRINTS | PR00367 | 3.8E-10 | 96 | 107 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.8E-10 | 118 | 134 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 286 aa Download sequence Send to blast |
MAMAKELQET SSSSSSSAAS TSSCSSAVTD AWSSPARPNA VAGGKRKKEV VGEADEAAGG 60 GAGEEEEEEA EAAAAGKSSA ATKKRKRSSD GKHPVYRGVR MRAWGKWVSE IREPRKKSRI 120 WLGTFPTADM AARAHDVAAL AIKGRAAHLN FPDLAGVLPR AASASPKDVQ AAAALAAAFT 180 TSPSSSPSSP SSADDVAPCV VHADADEQPA AAAKNDDDDG STTAPVAAAA AADEQQLFDL 240 PDLLFDIQDG PFGFPAMWAP LADVDEVNAE LRLEEPLLWD LGVTDA |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 7e-17 | 87 | 152 | 6 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 82 | 87 | KKRKRS |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00312 | DAP | Transfer from AT2G44940 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC079874 | 0.0 | AC079874.21 Oryza sativa chromosome 10 BAC OSJNBa0042H09 genomic sequence, complete sequence. | |||
GenBank | AP014966 | 0.0 | AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015614793.1 | 1e-140 | ethylene-responsive transcription factor ERF038 | ||||
Swissprot | Q8LBQ7 | 1e-51 | ERF34_ARATH; Ethylene-responsive transcription factor ERF034 | ||||
TrEMBL | A0A0E0IWH4 | 0.0 | A0A0E0IWH4_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA10G21000.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP159 | 35 | 354 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G44940.1 | 2e-31 | ERF family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|