PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA10G20730.3
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 189aa    MW: 20907.9 Da    PI: 8.4732
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA10G20730.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.71.9e-129481155
                     HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                     +RRdriN+++ +L++l+P++      K +Ka++L ++++Y+k+Lq
  ONIVA10G20730.3  9 KRRDRINQKMKTLQKLVPNS-----SKTDKASMLDEVIDYLKQLQ 48
                     7******************8.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.916147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-12353IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.9E-10948IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-15970IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.49E-14952No hitNo description
Gene3DG3DSA:4.10.280.104.1E-141156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0009506Cellular Componentplasmodesma
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MCDEDEHVKR RDRINQKMKT LQKLVPNSSK TDKASMLDEV IDYLKQLQAQ VQVMSRMGSM  60
MMPMGMAMPQ LQMSVMAQMA QMAQIGLSMM NMGQAGGYAP MHMHTPPFLP VSWDAAASSS  120
SAAAAADRPP QPTGAATSDA FSAFLASQAA QQNTQQPNGM EAYNRMMAMY QKLNHQQQQQ  180
QDQPSNSRQ
Functional Description ? help Back to Top
Source Description
UniProtRequired during the fertilization of ovules by pollen. {ECO:0000269|PubMed:15634699}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00034PBMTransfer from AT4G00050Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2879250.0AK287925.1 Oryza sativa Japonica Group cDNA, clone: J065218F01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612716.12e-86transcription factor UNE10 isoform X1
RefseqXP_015612717.12e-86transcription factor UNE10 isoform X1
SwissprotQ8GZ382e-25UNE10_ARATH; Transcription factor UNE10
TrEMBLA0A0E0IWC81e-131A0A0E0IWC8_ORYNI; Uncharacterized protein
TrEMBLA0A0E0IWD01e-134A0A0E0IWD0_ORYNI; Uncharacterized protein
STRINGONIVA10G20730.11e-132(Oryza nivara)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.13e-19bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]