PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA10G20730.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bHLH | ||||||||
Protein Properties | Length: 203aa MW: 22453.8 Da PI: 9.021 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38 | 2.9e-12 | 23 | 62 | 11 | 55 |
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +RRdriN+++ +L++l+P++ K +Ka++L ++++Y+k+Lq ONIVA10G20730.2 23 KRRDRINQKMKTLQKLVPNS-----SKTDKASMLDEVIDYLKQLQ 62 7******************8.....7******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.437 | 12 | 61 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.1E-14 | 23 | 70 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.0E-11 | 23 | 67 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.83E-15 | 23 | 84 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.37E-14 | 23 | 66 | No hit | No description |
Pfam | PF00010 | 8.9E-10 | 23 | 62 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009567 | Biological Process | double fertilization forming a zygote and endosperm | ||||
GO:0009506 | Cellular Component | plasmodesma | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MCDEDEHVVI RGEGAMRSVI YIKRRDRINQ KMKTLQKLVP NSSKTDKASM LDEVIDYLKQ 60 LQAQVQVMSR MGSMMMPMGM AMPQLQMSVM AQMAQMAQIG LSMMNMGQAG GYAPMHMHTP 120 PFLPVSWDAA ASSSSAAAAA DRPPQPTGAA TSDAFSAFLA SQAAQQNTQQ PNGMEAYNRM 180 MAMYQKLNHQ QQQQQDQPSN SRQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required during the fertilization of ovules by pollen. {ECO:0000269|PubMed:15634699}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00034 | PBM | Transfer from AT4G00050 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cold treatment. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK287925 | 0.0 | AK287925.1 Oryza sativa Japonica Group cDNA, clone: J065218F01, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015612716.1 | 1e-96 | transcription factor UNE10 isoform X1 | ||||
Refseq | XP_015612717.1 | 1e-96 | transcription factor UNE10 isoform X1 | ||||
Swissprot | Q8GZ38 | 1e-25 | UNE10_ARATH; Transcription factor UNE10 | ||||
TrEMBL | A0A0E0IWC9 | 1e-145 | A0A0E0IWC9_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA10G20730.1 | 4e-98 | (Oryza nivara) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00050.1 | 4e-19 | bHLH family protein |
Publications ? help Back to Top | |||
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