PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA10G20730.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bHLH | ||||||||
Protein Properties | Length: 427aa MW: 44594.9 Da PI: 5.4093 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 37 | 6.2e-12 | 247 | 286 | 11 | 55 |
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +RRdriN+++ +L++l+P++ K +Ka++L ++++Y+k+Lq ONIVA10G20730.1 247 KRRDRINQKMKTLQKLVPNS-----SKTDKASMLDEVIDYLKQLQ 286 7******************8.....7******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.157 | 236 | 285 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.3E-12 | 241 | 291 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.1E-13 | 247 | 294 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.6E-9 | 247 | 286 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.74E-13 | 247 | 290 | No hit | No description |
SuperFamily | SSF47459 | 7.85E-15 | 247 | 307 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009567 | Biological Process | double fertilization forming a zygote and endosperm | ||||
GO:0009506 | Cellular Component | plasmodesma | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 427 aa Download sequence Send to blast |
MNQCVPSWDL DDPVGGGGIG GGGGGGHRVV SGGGGGFMPV AVPTSDQYNE VAELTWEKGN 60 ISSHGLLLNR PAPPKFPPHQ QLQAAMGGGG GGGVVGDRET LEAVVGEAAA RSSSSSHLAA 120 RARPVPAPWL GSVGVVAAAD ALVPCDADAA EGRSKRPREV VGEDGRRACA SQGSAAPGRR 180 GESTLLTLDA CCGTAADDVC GFTTTTNNST SLEDRTEDKG SPETENTSIA GGASDSRGMC 240 DEDEHVKRRD RINQKMKTLQ KLVPNSSKTD KASMLDEVID YLKQLQAQVQ VMSRMGSMMM 300 PMGMAMPQLQ MSVMAQMAQM AQIGLSMMNM GQAGGYAPMH MHTPPFLPVS WDAAASSSSA 360 AAAADRPPQP TGAATSDAFS AFLASQAAQQ NTQQPNGMEA YNRMMAMYQK LNHQQQQQQD 420 QPSNSRQ |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00034 | PBM | Transfer from AT4G00050 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC069300 | 0.0 | AC069300.7 Oryza sativa chromosome 10 BAC OSJNBa0010C11 genomic sequence, complete sequence. | |||
GenBank | AK287925 | 0.0 | AK287925.1 Oryza sativa Japonica Group cDNA, clone: J065218F01, full insert sequence. | |||
GenBank | AP014966 | 0.0 | AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012618 | 0.0 | CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015612716.1 | 0.0 | transcription factor UNE10 isoform X1 | ||||
Refseq | XP_015612717.1 | 0.0 | transcription factor UNE10 isoform X1 | ||||
Refseq | XP_015612718.1 | 0.0 | transcription factor UNE10 isoform X2 | ||||
TrEMBL | A0A0E0IWC8 | 0.0 | A0A0E0IWC8_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA10G20730.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7474 | 31 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00050.1 | 3e-25 | bHLH family protein |