PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA10G19680.1

Organism

Oryza nivara

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 361aa MW: 38565.2 Da PI: 4.8559

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA10G19680.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30.4	7.1e-10	201	243	7	54
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr+++P + K++ +iL ++ Y+k+L ONIVA10G19680.1 201 MAERRRRKRLNDRLSMLRSVVPRiS------KMDRTSILGDTIGYVKEL 243 79*******************66......*************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.665	194	243	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.32E-14	198	253	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.8E-11	200	249	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.6E-14	201	254	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.8E-7	201	243	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence Send to blast
MELMDDDGSS SLLEELMAPL RRGTPTTTPE DLWLQAYPMM MSPMCGDGVV LGDLLVGGGN 60 ARNTLASPPP PPPSFPLPVP LTTTTPCPPL HEVSFEFDSI DCLGEVCNPY KRSGGAVRAT 120 AAAQVMVAAM DPRREAASSA VAVAAVEEEE RCKARRGAGG GGDSGELAPM FVFGGGGGAA 180 ASVRPRSCRP PQPGAPSKNL MAERRRRKRL NDRLSMLRSV VPRISKMDRT SILGDTIGYV 240 KELMDRIKNL QVEAATGDSS SSSTENLSML KLNTLKPPPR ENGSTRIEMA CAAIPELLPS 300 TLAALEALGV EIEQCVISCF DDFAMQASCL QDDKKREMTR DTEEIKQTLF RSAGYGDGCL 360 I

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence Send to blast

MELMDDDGSS SLLEELMAPL RRGTPTTTPE DLWLQAYPMM MSPMCGDGVV LGDLLVGGGN  60
ARNTLASPPP PPPSFPLPVP LTTTTPCPPL HEVSFEFDSI DCLGEVCNPY KRSGGAVRAT  120
AAAQVMVAAM DPRREAASSA VAVAAVEEEE RCKARRGAGG GGDSGELAPM FVFGGGGGAA  180
ASVRPRSCRP PQPGAPSKNL MAERRRRKRL NDRLSMLRSV VPRISKMDRT SILGDTIGYV  240
KELMDRIKNL QVEAATGDSS SSSTENLSML KLNTLKPPPR ENGSTRIEMA CAAIPELLPS  300
TLAALEALGV EIEQCVISCF DDFAMQASCL QDDKKREMTR DTEEIKQTLF RSAGYGDGCL  360
I

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	202	209	ERRRRKRL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269\|PubMed:17088607}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK063669	0.0	AK063669.1 Oryza sativa Japonica Group cDNA clone:001-119-D04, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015613752.2	0.0	transcription factor TDR-like
Swissprot	Q9LSL1	1e-48	BH093_ARATH; Transcription factor bHLH93
TrEMBL	A0A0E0IVX6	0.0	A0A0E0IVX6_ORYNI; Uncharacterized protein
STRING	ONIVA10G19680.1	0.0	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18317	9	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65640.1	4e-48	beta HLH protein 93

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Sharma N, et al. NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis. Development, 2016. 143(4): p. 682-90 [PMID:26758694] Chen YS, et al. Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis. Plant Mol. Biol., 2017. 93(3): p. 299-311 [PMID:27866313] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]