PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA10G19340.1

Organism

Oryza nivara

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

G2-like

Protein Properties

Length: 300aa MW: 32746.8 Da PI: 7.93

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA10G19340.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	100.6	1e-31	26	79	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH++Fv+a+++LGG++kAtPk++l+lm+v gLt++hvkSHLQ+YR ONIVA10G19340.1 26 PRLRWTPDLHHCFVHAIHKLGGQHKATPKRVLQLMGVGGLTISHVKSHLQMYRN 79 8****************************************************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.6E-30	22	81	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.894	22	82	IPR017930	Myb domain
SuperFamily	SSF46689	1.59E-15	24	80	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.5E-24	26	79	IPR006447	Myb domain, plants
Pfam	PF00249	5.2E-10	27	78	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
MAMVRGTMVR RERIEGVRQY NRSKVPRLRW TPDLHHCFVH AIHKLGGQHK ATPKRVLQLM 60 GVGGLTISHV KSHLQMYRNM RNDDLGIQQM DDQEQTFAGG MQIWTDMQLQ DHHHEPNEME 120 TRRAEASTQT GFLRSQGICE RDVSSGLPVP AAYYSYYTPM AHGAPPAAAD GAGHDDPPRL 180 LGLVVMATTT RRGSREEHKA TPPPENGAIR HGRKARRTTA AAEEEERDGD GDELSLSLTL 240 DSGLSCRSSG GAGAYCCSEG SSSNWLISSP SSTTSLVAGG CSRRSTPAML SSVVSLDLSL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-17	27	81	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-17	27	81	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-17	27	81	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-17	27	81	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-17	27	81	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-17	27	81	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-17	27	81	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-17	27	81	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012618	1e-177	CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025876555.1	0.0	uncharacterized protein LOC112936623 isoform X2
TrEMBL	A0A0E0IVT4	0.0	A0A0E0IVT4_ORYNI; Uncharacterized protein
STRING	ONIVA10G19340.1	0.0	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7610	29	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02060.1	1e-29	G2-like family protein