PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA10G12560.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family FAR1
Protein Properties Length: 528aa    MW: 58743.4 Da    PI: 9.9681
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA10G12560.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR125.25.2e-0850825989
             FAR1 59 rtgCkaklkvkkek..dgkwevtkleleHnHel 89
                     +  C+a+++v k++   gkw+v+kl+ eHnHe+
  ONIVA10G12560.1 50 EERCRAMMEVVKKDavGGKWRVSKLVVEHNHEV 82
                     568*****99888889***************97 PP
2FAR128.16.5e-09114172248
             FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk............t 48 
                      fY  Y+++vGF+ r+ ++++s  ng +++++f Cs+  ++++++k+            +
  ONIVA10G12560.1 114 FYYGYGERVGFKARTGSNRRSVGNGVMIMQRFLCSRGNYANRRNKAngldelkeeevqD 172
                      9***********************************99999998886766665444440 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.1E-55082IPR004330FAR1 DNA binding domain
PfamPF031014.8E-6114171IPR004330FAR1 DNA binding domain
PROSITE profilePS511528.67303363IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 528 aa     Download sequence    Send to blast
MADHAAASAA ADADPSLRQG GDAADADEEE EEEEAAPSSA AGVGVGVGVE ERCRAMMEVV  60
KKDAVGGKWR VSKLVVEHNH EVEVAPCGEG EGEVAAAVPV MGMEFESVHA AKGFYYGYGE  120
RVGFKARTGS NRRSVGNGVM IMQRFLCSRG NYANRRNKAN GLDELKEEEV QDGAAGKRKR  180
GANNKRNPNP VKNNSEVIEV ESSAEKGVGT AVPNNGQEAR KMRGSKRGRT KKDVTEKDEK  240
PVVELEAEKE DEVVAQDGDD VEEQKGEREE EMEEEVQVEV QEKRGRGRPR KADAEGNALQ  300
ARVLRELGLR ASQYTNEERK KIVSKYLSKR QSRPVSARPA KIASRQALAE RRKRGDGGRF  360
LSSEGLTQPS ERRSKRLEKQ NLKKEDKVYR ILRRLKFRLG HRILHSNSDL ALFRDFLAYH  420
HLGRNQHLLL SSNLIYSNHP FIAVHKSPRP HLRTSSHCSF LAAILNWVTK PRIKASTPFQ  480
SGISCDLTKY GKGFLIKVQL PLIAIAFFLK LTSTFRANIL WPVVVQYV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1282290KRGRGRPRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0847480.0AC084748.11 Oryza sativa chromosome 3 BAC OSJNBa0010I09 genomic sequence, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630920.10.0protein FAR1-RELATED SEQUENCE 4 isoform X1
TrEMBLA0A0E0IT910.0A0A0E0IT91_ORYNI; Uncharacterized protein
STRINGONIVA10G12560.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP148331318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07500.12e-09FAR1 family protein