PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA10G11850.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 241aa    MW: 24568.6 Da    PI: 6.3935
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA10G11850.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF25.22.1e-086391043
                     HHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
           SRF-TF 10 qvtfskRrngilKKAeELSvLCdaevaviifsst 43
                       t+ k ++ ++  A ELS+LC+++va++ ++  
  ONIVA10G11850.1  6 DATYGKMQESLMEEARELSILCGVDVALLCAGGP 39
                     57999************************99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500669.503134IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.01E-7640IPR002100Transcription factor, MADS-box
PfamPF003195.8E-7737IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MKMEEDATYG KMQESLMEEA RELSILCGVD VALLCAGGPG TGDGDGGGGG VGVGGGRSRL  60
LHQYGGGGAG AARVHGRGDG GRDREAEGAA LGLLDDGNAV NGDGGGPDLL HIPIQPGAPD  120
SVVVPVISHA QPIASSTGAD FADAPNGFLA MDVGGSLIKS ATTRRSARPM GSSSGTPTMA  180
NLDQIHYLVG GSAFSIDALE SPTLLVRCKT LRIAIQFMLP LRHGRFRANV PSNHRRTETK  240
S
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0IT081e-171A0A0E0IT08_ORYNI; Uncharacterized protein
STRINGONIVA10G11850.11e-172(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2316555