PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA10G11830.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 408aa    MW: 42673.2 Da    PI: 5.6266
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA10G11830.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF42.67.8e-141647839
                     HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEE CS
           SRF-TF  8 nrqvtfskRrngilKKAeELSvLCdaevavii 39
                     +r  tf++R++ ++K A+ELSvLCda+vav++
  ONIVA10G11830.1 16 KRAATFARRKESVMKMAKELSVLCDAQVAVVV 47
                     7999**************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554556.8E-15158IPR002100Transcription factor, MADS-box
SMARTSM004327.7E-9160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006615.937161IPR002100Transcription factor, MADS-box
CDDcd002661.64E-20383No hitNo description
PRINTSPR004042.2E-7323IPR002100Transcription factor, MADS-box
PfamPF003192.2E-121552IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-72338IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-73859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MPRAKTPMGL IPFHKKRAAT FARRKESVMK MAKELSVLCD AQVAVVVGDP GGGAAEKAAW  60
ESEEGRSLTH REYLRGELRK QRAKLAKVRE EGAFKPWDDA LDGIAEETRK LHKYLSDKIE  120
AARARMEAMG LQLGDVDDNG VNGDDGGGLD LQQHVPPSAS DAKEFESVPV VHGGQYIGSS  180
SGGGGGGGGG GDIQMQTTPA ADGISFAEQY VPPPAVQPEH GIQYNAPMEG YPSQVPGNGL  240
PDLATGSIDV AAAAATTAPA RYPPTLDTGR HGSFLVAPRA QPLAFSTAGA DFINAPNNFL  300
TTGVSVSDYS VQSSGYGIGN QIDNAKQLLY QMQMQYPVGG TGGAEPSNTQ TQSPDLRSFS  360
NVVGDYSYTA AQSSANRLDQ MHHPVGGRGS TGGAAADPSD TQSKNRGS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0033310.0AP003331.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1088D01.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0IT060.0A0A0E0IT06_ORYNI; Uncharacterized protein
STRINGONIVA10G11830.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45722960