PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA10G10740.2
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 274aa    MW: 31009.8 Da    PI: 10.6456
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA10G10740.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.94e-07182229348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48 
                       WT  E   lv++v ++G g+W+   r +     Rt  ++k++w+++l
  ONIVA10G10740.2 182 HWTIKEVTNLVQGVSKHGVGRWTELKRDFFstSIRTSVHLKDKWRNLL 229
                      6****************************99989************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.53175233IPR017930Myb domain
SuperFamilySSF466899.4E-15177264IPR009057Homeodomain-like
SMARTSM007170.0016179231IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-10182230IPR009057Homeodomain-like
CDDcd116603.70E-19183230No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MEKIRGCCGL RTVVSGWELC ISWAMEKAAA AACGWRKGLE EGEPEWEAME LEAAAPAIFP  60
ADGGGGGGRR SPAAWRIYFN QHMRMTSTIC YKGPKMKQTW TNGQSCSPAA EGSITVQTPT  120
YPILNLVDFI PKDGCKRGPR GARKRQTFPS RGARTRRAFP LQQLCFGTTR NKRCRLRKNN  180
DHWTIKEVTN LVQGVSKHGV GRWTELKRDF FSTSIRTSVH LKDKWRNLLK ACGIDFTSTA  240
KGNAQKTMLW PLDKRLIEQI TQLAYKHPYP RQKY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0716450.0AK071645.1 Oryza sativa Japonica Group cDNA clone:J023105M22, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015613839.11e-154uncharacterized protein LOC4348738 isoform X2
TrEMBLA0A0E0ISM10.0A0A0E0ISM1_ORYNI; Uncharacterized protein
STRINGONIVA10G10740.20.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52252134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.12e-16TRF-like 6