PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA10G10740.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB_related | ||||||||
Protein Properties | Length: 259aa MW: 29043.4 Da PI: 10.6467 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 22 | 3.7e-07 | 182 | 229 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48 WT E lv++v ++G g+W+ r + Rt ++k++w+++l ONIVA10G10740.1 182 HWTIKEVTNLVQGVSKHGVGRWTELKRDFFstSIRTSVHLKDKWRNLL 229 6****************************99989************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.53 | 175 | 233 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.56E-14 | 177 | 237 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 0.0016 | 179 | 231 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.9E-10 | 182 | 230 | IPR009057 | Homeodomain-like |
CDD | cd11660 | 1.84E-19 | 183 | 230 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MEKIRGCCGL RTVVSGWELC ISWAMEKAAA AACGWRKGLE EGEPEWEAME LEAAAPAIFP 60 ADGGGGGGRR SPAAWRIYFN QHMRMTSTIC YKGPKMKQTW TNGQSCSPAA EGSITVQTPT 120 YPILNLVDFI PKDGCKRGPR GARKRQTFPS RGARTRRAFP LQQLCFGTTR NKRCRLRKNN 180 DHWTIKEVTN LVQGVSKHGV GRWTELKRDF FSTSIRTSVH LKDKWRNLLK ACGIDFTSTA 240 KIRQYSAPRN PKSGSYPEL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK071645 | 0.0 | AK071645.1 Oryza sativa Japonica Group cDNA clone:J023105M22, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015613839.1 | 1e-129 | uncharacterized protein LOC4348738 isoform X2 | ||||
TrEMBL | A0A0E0ISM0 | 0.0 | A0A0E0ISM0_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA10G10740.2 | 1e-179 | (Oryza nivara) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72650.2 | 2e-15 | TRF-like 6 |