PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA10G07810.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 331aa    MW: 34842.2 Da    PI: 7.1384
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA10G07810.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.75.7e-15112163155
                      CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +r++h ++Er+RR+++N+ ++ Lr+l+P++   ++++ + a+i+  A++Y+++L+
  ONIVA10G07810.1 112 QRMTHIAVERNRRRQMNEYLAVLRSLMPPS---YAQRGDQASIVGGAINYVRELE 163
                      79****************************...*******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.39E-15110167No hitNo description
Gene3DG3DSA:4.10.280.101.3E-14110167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.93E-17111173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.412111162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.7E-12112163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-11117168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MALEAVVYSH GGHFGGYGGG LMGGAPAAPW DVFAAAAGGG GAGSWDDPGL FAAEASLDVI  60
QGVDEWEVDQ DQHASSSSKV AARPPVKAAA AAGKRKRRRA KAAKNREEIE SQRMTHIAVE  120
RNRRRQMNEY LAVLRSLMPP SYAQRGDQAS IVGGAINYVR ELEQLLQTLE ARRTIKDHID  180
GGAGESPSPF AGFFAFPQYS TATSGHGGGG DAHSRIVVKP AETTTTAAGG GAGAAIADIE  240
ASMVEGHASV KVQARRRPRQ LLKLVAGLHQ LGLTTLHLNV TTVAAMAMYS FSLKVEDGCK  300
LGSVEEIASA VHEILERMQE EQAFADAKTS L
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19398KRKRRR
29498RKRRR
3112123RMTHIAVERNRR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0588090.0AK058809.1 Oryza sativa Japonica Group cDNA clone:001-003-C09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015613301.10.0transcription factor bHLH96
TrEMBLA0A0E0IRH90.0A0A0E0IRH9_ORYNI; Uncharacterized protein
STRINGONIVA10G07810.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74138156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.18e-59bHLH family protein